Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30109
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein L12.1/L12A|...   215   3e-57
SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein L12...   215   3e-57
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    29   0.55 
SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces...    28   0.72 
SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynei...    26   2.9  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   6.7  
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe...    25   8.9  

>SPCC31H12.04c |rpl1202|rpl12-2|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  215 bits (525), Expect = 3e-57
 Identities = 97/139 (69%), Positives = 123/139 (88%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 277
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 278 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 457
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 458 MARXLSGSVKEILGTAQSV 514
           +A+ LSG+VKEILGTA SV
Sbjct: 121 LAKELSGTVKEILGTAFSV 139


>SPCC16C4.13c |rpl1201|rpl12-1, rpl12.1|60S ribosomal protein
           L12.1/L12A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 165

 Score =  215 bits (525), Expect = 3e-57
 Identities = 97/139 (69%), Positives = 123/139 (88%)
 Frame = +2

Query: 98  MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 277
           MPPKFDPNE+K + +R VGGEV   S+LAPKIGPLGLSPKKVG+DIAKAT DWKGL++TV
Sbjct: 1   MPPKFDPNEVKTIFMRAVGGEVAGGSTLAPKIGPLGLSPKKVGEDIAKATKDWKGLRVTV 60

Query: 278 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIMRNRS 457
           +LT+QNRQA ++VVPSA+AL+I+ALKEP RDRKK KN+ H+GN+SL+++I +A+ MR +S
Sbjct: 61  KLTIQNRQAAVSVVPSASALVIKALKEPARDRKKDKNVAHSGNVSLDEIIEVARTMRFKS 120

Query: 458 MARXLSGSVKEILGTAQSV 514
           +A+ LSG+VKEILGTA SV
Sbjct: 121 LAKELSGTVKEILGTAFSV 139


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 28.7 bits (61), Expect = 0.55
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -1

Query: 501  VPRISFTEPERXRAIDLFLMIFAIPI-TSSREMLPL 397
            V R+  ++PE     DLFL I A+ + TSS+ +LPL
Sbjct: 1475 VKRLITSDPEGVLKKDLFLFIRALALRTSSKHLLPL 1510


>SPAPB21F2.03 |||ribosome biogenesis protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 172

 Score = 28.3 bits (60), Expect = 0.72
 Identities = 18/76 (23%), Positives = 32/76 (42%)
 Frame = +2

Query: 266 KITVQLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVIGIAKIM 445
           K + Q ++ N +    V  ++  L    LKE  +D++K ++       S   +   A+  
Sbjct: 23  KPSQQASIPNVELSSTVTSNSQVLNNDPLKETKKDKRKDRHFNWQQKFSNPKISASARKR 82

Query: 446 RNRSMARXLSGSVKEI 493
           RNR     L  +V  I
Sbjct: 83  RNRKARENLKVNVSSI 98


>SPBC216.02 |mcp5|num1, mug21|cortical anchoring factor for dynein
           Mcp5/Num1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 968

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 379 LFTITRRLLKGSDDKGCCRGNNSYLGLSVLNCQLHS 272
           +FT+ R  LK   +   CR N +  GLS   C  +S
Sbjct: 805 VFTLPRNNLKSKTNTKKCRDNLNLSGLSSSTCNANS 840


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 177 DDVAPTSPPTHRKFTILI 124
           D++A T PP HRK  IL+
Sbjct: 249 DELAKTLPPYHRKNLILV 266


>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
 Frame = +2

Query: 197 PLGLS--PKKVGDDIAKATSDWKGLKITVQLTVQNRQAQIAV 316
           PLG+   PKK+ +++A+      G+K+T   +VQ+    I V
Sbjct: 381 PLGVHMLPKKLDEEVARLHLGKLGVKLTTLTSVQSDYLGIPV 422


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,162,640
Number of Sequences: 5004
Number of extensions: 42974
Number of successful extensions: 102
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)