Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30107
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.3  
SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.0  
SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  

>SB_28981| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 655

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +2

Query: 440 IEEKXQRLEXAEXKRQAMLQAMKDA 514
           +EE+ +RLE  E +RQA  QAM++A
Sbjct: 319 LEEERKRLENLEKERQAAQQAMQEA 343


>SB_2413| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 493

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/40 (30%), Positives = 25/40 (62%)
 Frame = +2

Query: 173 PAPKQEGEGDPEFIKRQDQKRSDLDEQLKEYINEWRKQRA 292
           PA ++EGEG+P+  +R+ Q  +  ++Q K    + +K ++
Sbjct: 56  PANEEEGEGEPKPKRRKAQPSAPKEKQTKSRKRDKKKDKS 95


>SB_47849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1922

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 137 QSQNIPPRQTCWLFIECRTGRSRSLSHSALVSW 39
           +S  I  RQ+ WLFI CR G +     +  + W
Sbjct: 166 ESGYITQRQSYWLFIACRIGLATRAGPTVKLCW 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,369,164
Number of Sequences: 59808
Number of extensions: 157937
Number of successful extensions: 421
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)