Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30106
         (322 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyce...    89   2e-19
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    24   5.0  
SPAC3A12.16c |tim17||TIM23 translocase complex subunit Tim17|Sch...    24   6.6  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    24   6.6  
SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyc...    23   8.7  
SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family |Schizos...    23   8.7  

>SPBC1685.09 |rps29||40S ribosomal protein S29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 56

 Score = 88.6 bits (210), Expect = 2e-19
 Identities = 37/54 (68%), Positives = 42/54 (77%)
 Frame = +1

Query: 55  MGHANIWYSHPRRYGQGSRSCRSCSNRHGLIRKYGLNICRQCFREYAHDIGFKK 216
           M H N+W+SHPR+YG+GSR C     R GLIRKYGLNI RQ FREYA+DIGF K
Sbjct: 1   MAHENVWFSHPRKYGKGSRQCAHTGRRLGLIRKYGLNISRQSFREYANDIGFVK 54


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -2

Query: 111 PGSLSVSARVRIPNICVAHFKKLNCFSLTSNKLDTLQ 1
           PGS   S   +I +  VA   ++ C S + N+LD ++
Sbjct: 186 PGSAMRSLGDKISSTIVAQSARVPCMSWSGNELDQVR 222


>SPAC3A12.16c |tim17||TIM23 translocase complex subunit
           Tim17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 164

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -3

Query: 116 HDRDPCPYL 90
           H RDPCPY+
Sbjct: 6   HTRDPCPYV 14


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 97  GQGSRSCRSCSNRHGLIRKYGLNICRQC 180
           G GS    +  N+ G +  +GLNI RQC
Sbjct: 285 GAGSYHSFAIDNK-GRVYAWGLNITRQC 311


>SPBC4B4.02c |nca2||mitochondrial protein Nca2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 78  FSPSQIRTRIPVMPILLQQAWLNPQV 155
           F PS I    P + + L  AWL+ Q+
Sbjct: 278 FRPSAIERNWPKIFVTLLSAWLSTQI 303


>SPAC1687.21 ||SPAC222.01|phosphoglycerate mutase family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 8/17 (47%), Positives = 10/17 (58%)
 Frame = -3

Query: 188 SLKHCLHMFKPYLRIKP 138
           S+K C     PYL +KP
Sbjct: 54  SMKRCRETIAPYLELKP 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,310,836
Number of Sequences: 5004
Number of extensions: 24154
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)