Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30104
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC24B10.21 |tpi1|tpi|triosephosphate isomerase|Schizosaccharom... 141 5e-35
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro... 33 0.025
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 26 3.8
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 25 5.1
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc... 25 5.1
SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid aminotr... 25 5.1
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 25 6.7
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 25 8.9
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 25 8.9
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces... 25 8.9
SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr 2|||M... 25 8.9
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 25 8.9
>SPCC24B10.21 |tpi1|tpi|triosephosphate
isomerase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 249
Score = 141 bits (342), Expect = 5e-35
Identities = 73/164 (44%), Positives = 98/164 (59%), Gaps = 1/164 (0%)
Frame = +3
Query: 27 MGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDP-NVEVIVGVPAIYLSYVKTIIPDNVE 203
M RKF VGGN+KMNG + I+ L L+ +VE ++ +YL + + ++
Sbjct: 1 MARKFFVGGNFKMNGSLESMKTIIEGLNTTKLNVGDVETVIFPQNMYLITTRQQVKKDIG 60
Query: 204 VAAQNCWKSPKGAFTGEISPAMIKDVGVNWVILGHSERRTIFGEKDELVAEKVAHALESG 383
V AQN + GA+TGE S + D G+ + + GHSERRTIF E DE VA+K ALE G
Sbjct: 61 VGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQG 120
Query: 384 LKVIACIGETLEERESGKTEEVVFRQLKALVSAIGDKWENIVLA 515
L V+ACIGETL ERE+ +T VV RQL A+ + W IV+A
Sbjct: 121 LTVVACIGETLAEREANETINVVVRQLNAIADKV-QNWSKIVIA 163
>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 397
Score = 33.1 bits (72), Expect = 0.025
Identities = 20/54 (37%), Positives = 29/54 (53%)
Frame = -2
Query: 335 FTKNCSSFRMTKYNPIYSNVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLH 174
F + ++ TK N + SN+F+H+ + T +SS T L IIRNDS H
Sbjct: 26 FHSSVANIHFTKENNLKSNIFEHNNNSPTLRSSSVACNTCL----KIIRNDSFH 75
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.8 bits (54), Expect = 3.8
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 490 SPMADTKAFN-CLKTTSSVLPDSLSSRVSP 404
SP+ TK+FN L ++SS+L + S SP
Sbjct: 220 SPLTKTKSFNDALTSSSSILKPCMPSIASP 249
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 25.4 bits (53), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +3
Query: 192 DNVEVAAQNCWKSPKGAFTGEISPA 266
D E A+ SP G+FT +ISPA
Sbjct: 752 DGHEQASPLVSSSPSGSFTSQISPA 776
>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.4 bits (53), Expect = 5.1
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = -2
Query: 281 NVFDHSG*NFTSKSSFWRLPTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI*RSLF*I 102
N+FD + KS F + N +I DS ++ NT N SLF
Sbjct: 193 NIFDLDSGKWVFKSLFNHHCGIYRSNCVVINKDSEFLQMCRPINTTQDSNEHSIGSLFFY 252
Query: 101 INY-FVDLIFVTIHL 60
+NY FV++ I+L
Sbjct: 253 LNYNFVNVKRQVIYL 267
>SPBC428.02c |eca39|SPBC582.12c|branched chain amino acid
aminotransferase Eca39|Schizosaccharomyces pombe|chr
2|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 5.1
Identities = 23/83 (27%), Positives = 33/83 (39%)
Frame = +3
Query: 12 NKITEMGRKFVVGGNWKMNGDKNQINEIVNNLKKGPLDPNVEVIVGVPAIYLSYVKTIIP 191
+ I E+ R+ + WK+ K + E+ K+G L +EV A +S VK I
Sbjct: 279 DSILEICRERLAPKGWKITEGKYSMKEVAQASKEGRL---LEVFGAGTAALVSPVKAINY 335
Query: 192 DNVEVAAQNCWKSPKGAFTGEIS 260
E G T EIS
Sbjct: 336 KGTEYEIPMPEGQEAGPITSEIS 358
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 25.0 bits (52), Expect = 6.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 177 KTIIPDNVEVAAQNCWKSPKGAFTG 251
+ +I D+V + Q+CWK + A G
Sbjct: 231 RIVIRDSVTLEPQHCWKHHRDAVMG 255
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 437 LARFSLFESLTNTGNDFQARFKGMSNLFSNKFIF 336
++RF+L E L ND R K + FSN+ IF
Sbjct: 1148 ISRFNL-EQLEQDCNDICERMKNVEKDFSNEGIF 1180
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 24.6 bits (51), Expect = 8.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = -2
Query: 224 PTVLGCNFDIIRNDSLHIRQVNSRNTNNYLNIRI 123
P L N D IR ++ N NNY N+ +
Sbjct: 110 PDDLKVNADYIRMADQYVEVPGGSNNNNYANVEL 143
>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 684
Score = 24.6 bits (51), Expect = 8.9
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = -3
Query: 478 DTKAFNCLKTTSSVLPDSLSSRVS 407
D +FNC K +V SLSSR+S
Sbjct: 196 DQVSFNCKKVGDTVASLSLSSRLS 219
>SPBC3B9.10 |vti1||SNARE Vti1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 214
Score = 24.6 bits (51), Expect = 8.9
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 300 LGHSERRTIFGEKDELVAEKVA 365
+G S+R+ +FG +DE + +A
Sbjct: 85 IGKSDRKALFGNRDETSGDYIA 106
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 24.6 bits (51), Expect = 8.9
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 339 DELVAEKVAHALESGLKVIACIGETLEERESGKTE 443
D+ AEK+ + LK I+CI +EE + TE
Sbjct: 214 DKERAEKIELRVHESLKRISCIRSKVEELDQEITE 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,409
Number of Sequences: 5004
Number of extensions: 42729
Number of successful extensions: 155
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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