Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30103
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1 |Sch...    25   5.1  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    25   5.1  
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    25   6.7  

>SPAC23C4.14 |alg1||mannosyltransferase complex subunit Alg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 10/35 (28%), Positives = 22/35 (62%)
 Frame = +2

Query: 320 KTQASL*KL*CEFIVHSSTLVSSNYCWSPNANPFV 424
           K Q S+ K+ CE+   S+ L+ ++  W+P+ + ++
Sbjct: 227 KKQMSIKKIPCEYNPSSTKLLITSTSWTPDEDIYI 261


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -2

Query: 398 NSNWMIPAYWNVR 360
           N NW IP YW  R
Sbjct: 44  NRNWQIPLYWQQR 56


>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 15/36 (41%), Positives = 20/36 (55%)
 Frame = -1

Query: 510 SVIGGIDTFPAEDITTI*HLQVQLSLET*TKGFALG 403
           S    +   PAE ITT+ H+ + +SL T T  F LG
Sbjct: 149 SFASSVFAVPAEAITTVFHISLTVSLLTMTV-FLLG 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,500
Number of Sequences: 5004
Number of extensions: 39347
Number of successful extensions: 76
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)