Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30103
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)                      30   1.3  
SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)                   28   4.0  
SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)                   27   6.9  
SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.2  

>SB_34643| Best HMM Match : GLTT (HMM E-Value=3.6)
          Length = 399

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 331 CLCFRKYILCYYC*NLIVK*HLYF 260
           CLCF   ++CY C  L+V  +L F
Sbjct: 123 CLCFTLLVMCYLCCTLLVMDYLCF 146



 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -3

Query: 328 LCFRKYILCYYC*NLIVK*HLYF--MYQGLLQFMVKKRSYSYEVL 200
           LCF   ++CY C  L+V  +L F  +  G L F +    Y    L
Sbjct: 274 LCFTLLVMCYLCCTLLVMDYLCFTLLVMGYLCFTLLLMGYKCSTL 318


>SB_46020| Best HMM Match : PHD (HMM E-Value=9.3e-12)
          Length = 824

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = -2

Query: 479 LKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIPAY 372
           L  +R +D+  S F+  L     HWV  S    P Y
Sbjct: 698 LGRVRNFDVVSSEFIQILHTGSDHWVCGSTLGCPGY 733


>SB_25624| Best HMM Match : PHD (HMM E-Value=1.3e-17)
          Length = 1828

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 479  LKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 378
            L  +R +D+  S F+  L  R  HWV  S+   P
Sbjct: 1088 LGRVRNFDVVSSEFIQILHTRSDHWVCVSSLGCP 1121



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 479  LKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIP 378
            L  +R +D+  S F+  L  R  HWV  S+   P
Sbjct: 1701 LGRVRNFDVVSSEFIQILHTRSDHWVCVSSLGCP 1734


>SB_3795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 438

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -2

Query: 500 EE*ILSRLKTLRQYDICKSNFLLKLRQRDSHWVTNSNWMIPAY 372
           EE + SR++       C  NF LKL +R     T ++++IPA+
Sbjct: 12  EELLDSRIREFLSLP-CSVNFSLKLNKRHGRKTTCADFVIPAF 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,534
Number of Sequences: 59808
Number of extensions: 259748
Number of successful extensions: 411
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)