Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30102
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    27   1.7  
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo...    26   2.9  
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces...    25   5.1  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   5.1  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    25   6.7  
SPCC622.16c |epe1||Jmjc domain chromatin associated protein Epe1...    25   6.7  
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc...    25   8.9  

>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 71  LEIWRIENFEPVAVPKTQFGLFYSGDS 151
           L IW I+NFE +  P +   LF+S  S
Sbjct: 561 LYIWNIKNFEAIHSPVSTLPLFHSNFS 587


>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1388

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 225  PARTKPARRPSSR*TWTTNNSRDQRYSTERSNITSPRSS*NIS 353
            PA ++  ++PSS+ T     SR+Q  S   S + S +   N+S
Sbjct: 1251 PAISESRKKPSSKDTKIETPSREQSRSQTASPVKSEKDDGNVS 1293


>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 565

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = +3

Query: 153 TLY*TPQAIRTV*HGTSISGSARGPARTKPARRPSSR 263
           T+Y  P A+ T  +GT+I  +   P        P SR
Sbjct: 187 TIYGIPDALHTTQNGTTIHVTGTPPGAVSQRSEPDSR 223


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 311 EVQYYXSKEFLEYFSPAIRY 370
           E+ YY +   L++F P IRY
Sbjct: 478 EIAYYFTDVLLKWFQPIIRY 497


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1131

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 136 EETELSLRNGDRFEVLNPPYFE 71
           EE +L L++ +RF+V  P +FE
Sbjct: 457 EEMDLDLKSDERFKVDIPTFFE 478


>SPCC622.16c |epe1||Jmjc domain chromatin associated protein
           Epe1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 299 VQHREVQYYXSKEFLEYFSPAIRYLKGGHASG 394
           +QH E++ Y  K  LEY        K G ++G
Sbjct: 865 IQHEEMKAYRRKNDLEYIDQHFASSKSGISNG 896


>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 721

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = -3

Query: 178 IACGVQYNVGVPGVEETELSLRNGDRFEVLNPPYFETRLPAGIRECL 38
           +A GV++ VG    E    + +NGD ++ L      T LPAG   C+
Sbjct: 397 VADGVEFYVGAASSEVEAAAQKNGD-WQTLIDSGART-LPAGCGPCI 441


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,046,475
Number of Sequences: 5004
Number of extensions: 39652
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)