Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30102
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    25   0.61 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    24   0.81 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    22   3.3  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   5.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   5.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   7.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          21   10.0 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   10.0 

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.6 bits (51), Expect = 0.61
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 134 FYSGDSYIVLNTTGDKDRLTWDIHF 208
           F  GD+ I +N    K+++ WD  F
Sbjct: 666 FQPGDTIICINIKRQKEKIEWDPGF 690


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 42  AWCTSGILGRVHS 4
           A CTSGI+GR H+
Sbjct: 143 AICTSGIVGRTHT 155


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +2

Query: 269 LDDEQFQGSAVQHREVQYYXSKEFL 343
           +D EQF     +   VQY  S++ L
Sbjct: 281 VDTEQFSNPQYEENNVQYEGSQDIL 305


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -1

Query: 423 VPSLIVTWXKPEACP 379
           V S I  W KPEA P
Sbjct: 229 VMSWIAFWIKPEAIP 243


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 5.7
 Identities = 9/25 (36%), Positives = 11/25 (44%)
 Frame = +3

Query: 228 ARTKPARRPSSR*TWTTNNSRDQRY 302
           +RTK  R    R  W     R+Q Y
Sbjct: 29  SRTKEERLQYRREAWLVQQEREQEY 53


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 26  PEVHQAFADAGRKPG 70
           P++ QAFA+   +PG
Sbjct: 394 PQIRQAFAEETLQPG 408


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +2

Query: 119 TQFGLFYSGDSYIVLNTTGDKDRLTWD 199
           T  G   S D Y +L    +  R+ W+
Sbjct: 108 TMHGTVQSYDKYDLLENVNNAARINWE 134


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 243 ARRPSSR*TWTTNNSRDQRYSTERSN 320
           A +P+S  T  T + R QRY+   +N
Sbjct: 87  ASQPTSTTTSVTPSCRRQRYNIAAAN 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,122
Number of Sequences: 438
Number of extensions: 2677
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)