Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30101
         (516 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.8  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   6.7  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    25   8.9  

>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 407 VKVRKCASTCKCYEYLLACADVVFLKCYFILCVLTIYVL 291
           + +RK     K  E++L    +  L CY +L VL  YV+
Sbjct: 391 ILLRKKEDCKKLLEHVLPIRQLFLLNCYSLLNVLANYVV 429


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -2

Query: 401 VRKCASTCKCYEYL 360
           VR C + CKC EYL
Sbjct: 126 VRFCIAICKCIEYL 139


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = -2

Query: 203 SGQFNVAFDTLNEH*KYSLYIFQTMLKEETLNILNKI 93
           +G F +A  TL++  +   YI Q   +EE+  +L+ +
Sbjct: 178 NGDFRMAVKTLDDFRELCSYIDQEKAREESYQVLSAL 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,846
Number of Sequences: 5004
Number of extensions: 31656
Number of successful extensions: 52
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)