Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30100
         (516 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript...    25   2.0  
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript...    24   3.5  
M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    23   8.1  

>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 24.6 bits (51), Expect = 2.0
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -2

Query: 137 RERIACHRREQAAAGASSAG 78
           +E   C++R+Q A GA SAG
Sbjct: 865 QEDARCYQRQQEAGGALSAG 884


>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1222

 Score = 23.8 bits (49), Expect = 3.5
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -2

Query: 137 RERIACHRREQAAAGAS 87
           RE   CHRR  AA GAS
Sbjct: 851 REDARCHRRLLAAPGAS 867


>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 22.6 bits (46), Expect = 8.1
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +3

Query: 276 PSTPWAGSRPIRSSMXWSVRLLAPSTSLNS 365
           P+  W+ +  +RS     +R   P  SLNS
Sbjct: 159 PALGWSPAAAVRSDSSLPMRHYVPHISLNS 188


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 398,424
Number of Sequences: 2352
Number of extensions: 6311
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 46937349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)