Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30100
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   2.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   10.0 
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   10.0 
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   10.0 

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 87  RGPSSGLLPPVTGNPL 134
           R P+ G LPP  G P+
Sbjct: 402 RSPAGGQLPPSAGAPM 417


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 415 DVXFVRAAGHAVGE 374
           D+ +VRA G AVG+
Sbjct: 34  DIIWVRADGSAVGD 47


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 443 EEGKIDSERLRHALMTWGDKF 505
           E  KID   L+H +    D+F
Sbjct: 396 ESNKIDETTLKHLIDVASDRF 416


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = +2

Query: 443 EEGKIDSERLRHALMTWGDKF 505
           E  KID   L+H +    D+F
Sbjct: 396 ESNKIDETTLKHLIDVASDRF 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 100,612
Number of Sequences: 438
Number of extensions: 1415
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)