Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30098
         (516 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   1.6  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   2.8  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   2.8  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   6.5  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    21   8.6  

>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +3

Query: 258 EGSKIKSTHGASDEDILSYIQYVTKLKNDLVTNKQ 362
           EG K+K  +    E  +S  QY TK  N++  +++
Sbjct: 884 EGYKVKLEYDGPYETSISSGQYTTKDPNEVTCDEE 918


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 146 HDAHHRQIHCXYG 108
           H  HH+Q H  YG
Sbjct: 179 HQPHHQQQHMMYG 191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.2 bits (45), Expect = 2.8
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -2

Query: 146 HDAHHRQIHCXYG 108
           H  HH+Q H  YG
Sbjct: 181 HQPHHQQQHMMYG 193


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 67  FYKKVL*IEIVFANAVL 17
           FY K L  + +FANAVL
Sbjct: 323 FYNKPLIHKEIFANAVL 339


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +1

Query: 406  TSGSRHWTSNTTSP 447
            T  S  W+S TTSP
Sbjct: 1037 TKPSTWWSSTTTSP 1050



 Score = 20.6 bits (41), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 141  IVTPKNEFMCGIYGMSFAYY 200
            +V PK+EF    Y  ++A+Y
Sbjct: 1816 LVDPKSEFKVVCYFTNWAWY 1835


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -1

Query: 408 GSISSPRACRPSADRTACW*PNRFLTWSR 322
           GS+ SP    P+   T+ + PN  L+ S+
Sbjct: 55  GSLLSPSGNTPNKSSTSPYPPNHPLSGSK 83


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,195
Number of Sequences: 336
Number of extensions: 2961
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12363686
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)