Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30098
(516 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|ch... 42 7e-05
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch... 40 2e-04
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc... 27 1.7
SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase Abc4|... 27 2.2
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch... 27 2.2
SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 3.8
SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase ... 25 5.1
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 25 6.7
SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce... 25 8.9
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ... 25 8.9
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy... 25 8.9
>SPCC1393.13 |||DUF89 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 442
Score = 41.5 bits (93), Expect = 7e-05
Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 5/104 (4%)
Frame = +3
Query: 186 SFAYYSLKERLPVILTKIIDYLSREGSKIKSTHGASDEDIL-----SYIQYVTKLKNDLV 350
S+A + ++ P+I T +ID +SR SK G SD+ I + +LK DL
Sbjct: 20 SYASVCVMKKWPIIATNVIDEVSRNISKALEA-GMSDKAAYVTQGKEIISLLNQLKYDLQ 78
Query: 351 TNKQYDLLTVDTPEARRWNQWIEALDIKHYFTNVWVFTECYVYR 482
N+ L P+ +N+ +E + + W++ CY YR
Sbjct: 79 HNRPLKPLVGQGPDIDDYNEELEQVGPLTWGDAPWLYAGCYFYR 122
>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 440
Score = 39.9 bits (89), Expect = 2e-04
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 4/105 (3%)
Frame = +3
Query: 186 SFAYYSLKERLPVILTKIIDYLSREGSKIKSTHGASDEDILSY----IQYVTKLKNDLVT 353
SF + R +ILT I +S SK+ ST + D ++++ + + K+D+
Sbjct: 18 SFGHECFTRRWGIILTGIEKDVSERLSKLAST--SKDSEVVAQGKPLLNDLEAFKSDIKN 75
Query: 354 NKQYDLLTVDTPEARRWNQWIEALDIKHYFTNVWVFTECYVYRRL 488
++ L + + +N+ ++ LD + W+++ECY YRR+
Sbjct: 76 DRPLVPLEGEGQDIVEYNEELKQLDNASWGNAPWLYSECYYYRRI 120
>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 934
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +1
Query: 418 RHWTSNTTSPMCGCSRSATFTEGSG 492
+HW+ T + C R A+F GSG
Sbjct: 703 QHWSLMPTHALMSCVRPASFVAGSG 727
>SPAC30.04c |abc4||glutathione S-conjugate-exporting ATPase
Abc4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1469
Score = 26.6 bits (56), Expect = 2.2
Identities = 15/50 (30%), Positives = 24/50 (48%)
Frame = -3
Query: 415 IHWFHLLASGVSTVSRSYCLLVTKSFFNLVTYCIYESMSSSLAPCVDLIL 266
I W +L GVS+ S C ++ N + + SSS+ P V ++L
Sbjct: 291 IFWRQILGMGVSSFMVSVCQFLSPIALNRLLKHLESPSSSSVNPLVWIVL 340
>SPAC26H5.04 |||vacuolar import and degradation protein
Vid28|Schizosaccharomyces pombe|chr 1|||Manual
Length = 729
Score = 26.6 bits (56), Expect = 2.2
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +3
Query: 318 QYVTKLKNDLVTNKQYDLLTVDTPE 392
+YVT+L +D + N+ +DL T+ E
Sbjct: 133 EYVTQLHSDSIINQMFDLYTLPLKE 157
>SPBPB2B2.06c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 3.8
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 300 DILSYIQYVTKLKNDLVTNKQYDLLTVDTPEARRWNQWIEALDIKHYFTN 449
D + +V ++K +L K DLL VDT + N +A D + +TN
Sbjct: 72 DFGEFKSFVLRMK-ELADFKDVDLLLVDTGDLHDGNGLSDASDPEGIYTN 120
>SPBC56F2.10c |alg5||dolichyl-phosphate beta-glucosyltransferase
Alg5 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 25.4 bits (53), Expect = 5.1
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Frame = -3
Query: 469 HSVNTHTLVK*CLMSNASIHWFHLLAS--GVSTVSRSYC 359
H VNT +VK + N +H FH L G+ + + C
Sbjct: 196 HMVNTAAVVKRSFIRNFLMHCFHKLLQILGIREIGDTQC 234
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 389 RGEEMEPVDRGIGHQTLLHQCVGVHG 466
+G + P RGIGHQ ++ Q + G
Sbjct: 150 QGIDFYPAGRGIGHQIMVEQGYAMPG 175
>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 24.6 bits (51), Expect = 8.9
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = +3
Query: 198 YSLKERLPVILTKIID 245
+ LKERLP ++ IID
Sbjct: 248 FELKERLPTVIDSIID 263
>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 878
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +3
Query: 147 TPKNEFMCGIYGM-SFAYYSLKERLPVILTKIIDYLSREGSKIKST 281
TP + + G S S + LPV+ TK++D + +E S + T
Sbjct: 527 TPPSPLLVGTPSKESLKEASSDDELPVLATKLVDNVIKEKSPLSLT 572
>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 786
Score = 24.6 bits (51), Expect = 8.9
Identities = 17/56 (30%), Positives = 25/56 (44%)
Frame = +1
Query: 337 KTIWSPTSSTIC*RSTRPRRGDGTSGSRHWTSNTTSPMCGCSRSATFTEGSGRAVS 504
+T +PT++T T PR T+ S TSN+T + S G+G S
Sbjct: 148 RTTSTPTTTTARTTRTTPRPTATTNTSNQSTSNSTRNGTSAATSNGTGTGAGTGAS 203
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,757
Number of Sequences: 5004
Number of extensions: 46734
Number of successful extensions: 147
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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