Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30098
(516 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0010 - 9318031-9318275,9318364-9319123,9319528-9319845,931... 31 0.42
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 29 2.2
01_05_0403 - 21817691-21817747,21818070-21818171,21818184-218182... 29 2.2
06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099 29 2.9
04_04_0529 - 25997736-25998055,25998441-25998804,25999563-259996... 29 2.9
09_02_0398 + 8559332-8559718,8561264-8561386,8561537-8561581,856... 28 5.1
04_04_1106 - 30948626-30948724,30948841-30949176,30949231-309493... 27 8.9
04_04_0916 + 29390813-29391893,29402054-29402652 27 8.9
03_05_0257 + 22439915-22440275,22440280-22440627,22440962-224410... 27 8.9
>04_03_0010 -
9318031-9318275,9318364-9319123,9319528-9319845,
9319921-9320229,9320594-9321013
Length = 683
Score = 31.5 bits (68), Expect = 0.42
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +3
Query: 54 TFL*KNKHKKPTMAPYDWPIXTVNLP 131
T+L K+K+++ T+A YDW + +N P
Sbjct: 391 TYLNKSKYREATLAGYDWVMRNLNFP 416
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 29.1 bits (62), Expect = 2.2
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = +1
Query: 349 SPTSSTIC*RSTRPRRGDGTSGSRHWTSNTTSPMCGCSRSATFTEGSGRAVS 504
+PTS T + P RGD +G+ TS S + G S A G G +S
Sbjct: 85 APTSGTGLQDTNLPGRGDVATGTNSPTSTFKSSLDGRSNHAGLAAGDGNNLS 136
>01_05_0403 -
21817691-21817747,21818070-21818171,21818184-21818272,
21818612-21818714,21819938-21820223,21820577-21820725,
21821500-21821612,21821764-21821922,21822272-21822341
Length = 375
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/33 (36%), Positives = 20/33 (60%)
Frame = +3
Query: 261 GSKIKSTHGASDEDILSYIQYVTKLKNDLVTNK 359
G +K H A++E+++S YVT+LK + K
Sbjct: 256 GGDVKMFHNAAEENVISIRAYVTELKERVAIPK 288
>06_03_0275 - 19079782-19081262,19081803-19082029,19085080-19085099
Length = 575
Score = 28.7 bits (61), Expect = 2.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +3
Query: 399 RWNQWIEALDIKHYFTNVWVFT 464
RW +W AL +++YF+N WV T
Sbjct: 526 RWPRWRAAL-VRNYFSNPWVAT 546
>04_04_0529 - 25997736-25998055,25998441-25998804,25999563-25999675,
25999880-25999989,26000155-26000311,26000390-26000915,
26001101-26001265,26002470-26002589,26003022-26003093,
26003422-26003499,26003965-26004057,26004491-26004647,
26005351-26005589,26006907-26007050,26007637-26007666,
26010610-26010993,26011486-26011554,26012353-26012418,
26013166-26013255,26013583-26013628,26014318-26014419,
26014552-26014694
Length = 1195
Score = 28.7 bits (61), Expect = 2.9
Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 324 VTKLKNDLVTNK-QYDLLTVDTPEARRWNQWIEALDIKHYFTNV 452
V LK+D VTN + +++VDT + RW+ I +I + +V
Sbjct: 1047 VLSLKSDSVTNDARQTIISVDTKSSTRWSLAINKQEIDDFTVHV 1090
>09_02_0398 +
8559332-8559718,8561264-8561386,8561537-8561581,
8562215-8562290,8562398-8562510,8562774-8562821,
8563101-8563229
Length = 306
Score = 27.9 bits (59), Expect = 5.1
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +1
Query: 376 RSTRPRRGDGTSGSRHWTSNTTSPMCGCSRSATFTEGSGRA 498
R P G+G S +RHW+ + RSA F+ RA
Sbjct: 112 RRRSPGSGNGISSTRHWSRRGSRNFSRQGRSAPFSSRVRRA 152
>04_04_1106 -
30948626-30948724,30948841-30949176,30949231-30949353,
30949425-30949517,30949603-30949806,30949884-30950134,
30951011-30952391,30952737-30953174
Length = 974
Score = 27.1 bits (57), Expect = 8.9
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +3
Query: 228 LTKIIDYLSREGSKIKSTHG---ASDEDILSYIQYVTKLKNDLVTNKQYDLLTVDTPEAR 398
L+ + L+R+G TH E + ++ KLK D+ ++ ++ R
Sbjct: 653 LSTFLGALARDGILAPLTHQDWRRVPEKNKDVMYHIVKLKFDIAPAAEFWIMKCI---GR 709
Query: 399 RWNQWIEALDIKHYFTNVWVFTEC 470
+W W L KHY T+ V EC
Sbjct: 710 KWKSWKALLKQKHYDTHETV-EEC 732
>04_04_0916 + 29390813-29391893,29402054-29402652
Length = 559
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +2
Query: 326 DQVKKRFGHQQAVRSADGRHARGEEMEPVDRGIG 427
D + RFG ++ R D R ++ DRG+G
Sbjct: 316 DDTRDRFGRERDGRDKDSRRHYNDDHPDFDRGLG 349
>03_05_0257 +
22439915-22440275,22440280-22440627,22440962-22441015,
22441390-22441763
Length = 378
Score = 27.1 bits (57), Expect = 8.9
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +1
Query: 379 STRPRRGDGTSGSRHWTSNTTSPMCGC 459
S R R G R W S+T +CGC
Sbjct: 314 SRRHHRWRGLRDRRQWQSHTRGRLCGC 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,296,858
Number of Sequences: 37544
Number of extensions: 306540
Number of successful extensions: 917
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1118831240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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