Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30098
         (516 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58916| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   3e-08
SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)                27   6.9  
SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)                   27   6.9  
SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)           27   6.9  
SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06)              27   9.2  

>SB_58916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 31/106 (29%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
 Frame = +3

Query: 216 LPVILTKIIDYLSREGSK-IKSTHGASDEDILSYIQYVTKLKNDLVTNKQYDLLTVDTPE 392
           +PVILTK+ID + R  S+ +K  +    ED    +  ++KL+ ++ T K+   +  +  +
Sbjct: 1   MPVILTKVIDSIHRRASQFVKDNNLEMSEDAKLVVSKLSKLRYEMKTGKKLTEIEGNAAD 60

Query: 393 ARRWNQWIEALD--IKH----YFTNVWVFTECYVYRRLREGCELSK 512
           A  WN  +++    +++    +FT  W+  EC++YR++ E   LSK
Sbjct: 61  ASLWNSALKSAKSLVENAEPAWFTVPWLTCECFLYRKIYEAFSLSK 106


>SB_37813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 450

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 22/93 (23%), Positives = 41/93 (44%), Gaps = 5/93 (5%)
 Frame = +3

Query: 174 IYGMSFAYYSLKERL-----PVILTKIIDYLSREGSKIKSTHGASDEDILSYIQYVTKLK 338
           ++G  +  Y L +R+       +L+     LSRE   I   H A    +  +  YV +  
Sbjct: 333 LFGSEYHTYFLPQRVGRDKAEDLLSSAAPLLSREAVNIGLVHSAYGNTVQEFSAYVDEKA 392

Query: 339 NDLVTNKQYDLLTVDTPEARRWNQWIEALDIKH 437
               +NK++  L +    + R  +W++ L+ KH
Sbjct: 393 RYFASNKKHQQL-IRMKNSYRSEKWLQMLE-KH 423


>SB_53713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 903

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 11/36 (30%), Positives = 24/36 (66%)
 Frame = +3

Query: 231 TKIIDYLSREGSKIKSTHGASDEDILSYIQYVTKLK 338
           T +I ++  +GS++ STH  ++ ++L  ++  T+LK
Sbjct: 275 TPLITWVLPDGSQVNSTHYITETEVLDDLELRTRLK 310


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +2

Query: 314 YTIRDQVKKRFGHQQAVRSADGRHARGEEMEPVDRGIGHQTLLHQCVGVHGVLRLPKAQG 493
           +T+R  V+ R  HQ+      G H+  E+  P D     +    Q + V G  R    +G
Sbjct: 253 FTLRPSVEARDMHQEGWAGESGAHSEDEDTPPPDSLRSIKAKARQRMSVEG-SRKSTGKG 311

Query: 494 GL 499
           GL
Sbjct: 312 GL 313


>SB_510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1907

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +3

Query: 255 REGSKIKSTHGASDEDILSYIQYVTKLKNDLVTNKQYDLLTVDTPE 392
           R G+ +K  H  S ED    +  VTK K  +  N +Y++     PE
Sbjct: 593 RSGNDVKVYHNVS-EDKQGDVTVVTKTKRVVTNNTRYEIKNDHEPE 637


>SB_12185| Best HMM Match : AAA_5 (HMM E-Value=0.002)
          Length = 3616

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/69 (20%), Positives = 30/69 (43%)
 Frame = +3

Query: 195 YYSLKERLPVILTKIIDYLSREGSKIKSTHGASDEDILSYIQYVTKLKNDLVTNKQYDLL 374
           YY+  ER+  +  K+ + +        + HG  +    ++ + + KL N +  N++Y   
Sbjct: 390 YYNTSERMTALFVKVTNQMITACKNYITEHGYKNVWEYTHSELIEKLGNCIRLNEEYQRC 449

Query: 375 TVDTPEARR 401
              T +  R
Sbjct: 450 FQKTKQVTR 458


>SB_11967| Best HMM Match : Pollen_allerg_2 (HMM E-Value=1.7)
          Length = 1815

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 20/64 (31%), Positives = 28/64 (43%)
 Frame = +3

Query: 78   KKPTMAPYDWPIXTVNLPVMRIVTPKNEFMCGIYGMSFAYYSLKERLPVILTKIIDYLSR 257
            K PT+ P D      + P+     P +EF    + M   YYS+     V L    D LSR
Sbjct: 862  KSPTVPPRDMRAMATSTPLRHPQGPASEFDMN-HSMDELYYSMYSS-QVTLDDSADILSR 919

Query: 258  EGSK 269
            + S+
Sbjct: 920  KTSE 923


>SB_49005| Best HMM Match : Lectin_C (HMM E-Value=8.6e-06)
          Length = 451

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = +3

Query: 294 DEDILSYIQYVTKLKNDLVTNKQYDLLTVDTPEARRWNQWIEALDIKH-YFTNVWVFTEC 470
           DEDI + + Y      D  T  +YD  ++    A     W++A ++ + Y  + W   + 
Sbjct: 190 DEDIKTTVLYFPGTPGDYATTPRYDFSSISVTIA----MWVKAFEMNNTYLYSYWDRGK- 244

Query: 471 YVYR 482
           YV+R
Sbjct: 245 YVFR 248


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,484,431
Number of Sequences: 59808
Number of extensions: 346755
Number of successful extensions: 986
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 985
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)