Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30098
         (516 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL590543-2|CAI10942.1|  441|Homo sapiens protein ( Human DNA seq...    71   2e-12
AK022972-1|BAB14339.1|  441|Homo sapiens protein ( Homo sapiens ...    71   2e-12
BC011348-1|AAH11348.1|  441|Homo sapiens chromosome 6 open readi...    68   2e-11
BC036250-1|AAH36250.2|  280|Homo sapiens RNF212 protein protein.       32   1.4  
AK093503-1|BAC04187.1|  637|Homo sapiens protein ( Homo sapiens ...    30   5.5  

>AL590543-2|CAI10942.1|  441|Homo sapiens protein ( Human DNA
           sequence from clone RP11-108N8 on chromosome 6 Contains 
           the 5' end of the RMND1 gene for required for meiotic
           nuclear  ).
          Length = 441

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
 Frame = +3

Query: 186 SFAYYSLKERLPVILTKIIDYLSREGSKIKSTHGASD-EDILSYIQYVTKLKNDLVTNKQ 362
           SFAY ++K+R+P ILTK+ID L R  S+    HG    E     I  ++KL+N+L T+K 
Sbjct: 15  SFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAISLLSKLRNELQTDKP 74

Query: 363 YDLLTVDTPEARRWNQWIE-------ALDIK-HYFTNVWVFTECYVYRRLRE 494
           +  L     +   WNQ++E         D K  +F + W+  ECY+YRR+ E
Sbjct: 75  FIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYMYRRIHE 126


>AK022972-1|BAB14339.1|  441|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12910 fis, clone NT2RP2004412. ).
          Length = 441

 Score = 70.9 bits (166), Expect = 2e-12
 Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 9/112 (8%)
 Frame = +3

Query: 186 SFAYYSLKERLPVILTKIIDYLSREGSKIKSTHGASD-EDILSYIQYVTKLKNDLVTNKQ 362
           SFAY ++K+R+P ILTK+ID L R  S+    HG    E     I  ++KL+N+L T+K 
Sbjct: 15  SFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAISLLSKLRNELQTDKP 74

Query: 363 YDLLTVDTPEARRWNQWIE-------ALDIK-HYFTNVWVFTECYVYRRLRE 494
           +  L     +   WNQ++E         D K  +F + W+  ECY+YRR+ E
Sbjct: 75  FIPLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYMYRRIHE 126


>BC011348-1|AAH11348.1|  441|Homo sapiens chromosome 6 open reading
           frame 211 protein.
          Length = 441

 Score = 68.1 bits (159), Expect = 2e-11
 Identities = 41/112 (36%), Positives = 61/112 (54%), Gaps = 9/112 (8%)
 Frame = +3

Query: 186 SFAYYSLKERLPVILTKIIDYLSREGSKIKSTHGASD-EDILSYIQYVTKLKNDLVTNKQ 362
           SFAY ++K+R+P ILTK+ID L R  S+    HG    E     I  ++KL+N+L T+K 
Sbjct: 15  SFAYLTIKDRIPQILTKVIDTLHRHKSEFFEKHGEEGVEAEKKAISLLSKLRNELQTDKP 74

Query: 363 YDLLTVDTPEARRWNQWIE-------ALDIK-HYFTNVWVFTECYVYRRLRE 494
           +  L     +   WNQ++E         D K  +F + W+  ECY+ RR+ E
Sbjct: 75  FIRLVEKFVDTDIWNQYLEYQQSLLNESDGKSRWFYSPWLLVECYIDRRIHE 126


>BC036250-1|AAH36250.2|  280|Homo sapiens RNF212 protein protein.
          Length = 280

 Score = 31.9 bits (69), Expect = 1.4
 Identities = 19/72 (26%), Positives = 28/72 (38%)
 Frame = +1

Query: 286 ARATKTYFRIYNT*PS*KTIWSPTSSTIC*RSTRPRRGDGTSGSRHWTSNTTSPMCGCSR 465
           +R T  Y R+       K   + +S  +   ST   +        HW S T +P  GC R
Sbjct: 77  SRETSQYLRLSRGCCRLKLCPATSSKEVPRGSTHGSQAAARDPQEHWVSTTRAPRPGCRR 136

Query: 466 SATFTEGSGRAV 501
           S +  E  G  +
Sbjct: 137 SQSQPEAHGNTI 148


>AK093503-1|BAC04187.1|  637|Homo sapiens protein ( Homo sapiens
           cDNA FLJ36184 fis, clone TESTI2026925. ).
          Length = 637

 Score = 29.9 bits (64), Expect = 5.5
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 117 TVNLPVMRIVTPKNEFMCGIYGMSFAYYSLKERLPVILTKIIDYLSR 257
           +V+ P+  I+   N  MCG+Y   FA YSL      ++  I  ++ R
Sbjct: 591 SVDFPIPDILCKWNHVMCGLYIGLFAEYSLSTSFIRVVESIKHFIPR 637


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,823,853
Number of Sequences: 237096
Number of extensions: 1662970
Number of successful extensions: 7864
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7705
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7853
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4876707572
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)