Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30098
         (516 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    22   3.3  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    22   3.3  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    22   3.3  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.5  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   10.0 
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                21   10.0 

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 300 DILSYIQYVTKLKNDLVTNKQYDLLT--VDTPEARRWNQWIEALD 428
           D ++Y Q  T LK  L T     +L+  + +P    WN W E L+
Sbjct: 140 DPINYAQKRT-LKRVLATIAGVWILSGAISSPPLAGWNDWPEELE 183


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 300 DILSYIQYVTKLKNDLVTNKQYDLLT--VDTPEARRWNQWIEALD 428
           D ++Y Q  T LK  L T     +L+  + +P    WN W E L+
Sbjct: 140 DPINYAQKRT-LKRVLATIAGVWILSGAISSPPLAGWNDWPEELE 183


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 22.2 bits (45), Expect = 3.3
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +3

Query: 300 DILSYIQYVTKLKNDLVTNKQYDLLT--VDTPEARRWNQWIEALD 428
           D ++Y Q  T LK  L T     +L+  + +P    WN W E L+
Sbjct: 140 DPINYAQKRT-LKRVLATIAGVWILSGAISSPPLAGWNDWPEELE 183


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = -2

Query: 503 LTALPEPSVNVAL 465
           L+A+PEPS N A+
Sbjct: 370 LSAIPEPSKNPAM 382


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 323 VLYIRKYVFVARAVRGFNFRSLSG*IIYDFR*DHWQSLF 207
           +LY+R    VA+  R  + +  +G +IY+    H  + F
Sbjct: 731 MLYLRGREVVAQRERAADMKRRNGALIYNILPPHVAAYF 769


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +3

Query: 336 KNDLVTNKQYDLLTVDTPEARR 401
           KN++ T  Q     +DTP  ++
Sbjct: 38  KNNIETKNQLSPFNIDTPNRQK 59


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,091
Number of Sequences: 438
Number of extensions: 3182
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)