Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30095
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.016
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 34 0.022
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.029
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.066
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.20
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 31 0.27
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.35
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 30 0.47
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.47
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.4
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.9
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.5
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 3.3
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.3
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.3
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.7
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.7
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 7.6
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 7.6
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 7.6
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 7.6
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 7.6
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 7.6
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.016
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +1
Query: 448 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 624
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 625 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 801
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 802 KQ 807
K+
Sbjct: 143 KR 144
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 34.3 bits (75), Expect = 0.022
Identities = 21/80 (26%), Positives = 44/80 (55%)
Frame = +1
Query: 577 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 756
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 757 QKRQDYDLKELKERQKQQLR 816
++ Q +++ +++QQL+
Sbjct: 155 EEAQRLRQEQILNKERQQLK 174
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.029
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 442 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 621
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 622 KISL 633
K L
Sbjct: 196 KAML 199
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 32.7 bits (71), Expect = 0.066
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 3/133 (2%)
Frame = +1
Query: 436 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 612
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 613 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKR--QDYDLKE 786
E+ K + K E K +++A+E + + E K + EE+ KR ++ +E
Sbjct: 631 EKAKREAEEKAKREAEE-----KAKREAEEKAKREAE-ENAKREAEEKAKREAEENAKRE 684
Query: 787 LKERQKQQLRHKA 825
+E+ K++ A
Sbjct: 685 AEEKVKRETEENA 697
Score = 31.9 bits (69), Expect = 0.12
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 7/134 (5%)
Frame = +1
Query: 445 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 618
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 619 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QDYDLK 783
K + K E + + +KA+ E K E E K + EE+ KR ++ +
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 784 ELKERQKQQLRHKA 825
E +E+ K++ A
Sbjct: 668 EAEEKAKREAEENA 681
Score = 29.5 bits (63), Expect = 0.61
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = +1
Query: 436 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 612
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 636 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEENAKREAEEKVKRETE 694
Query: 613 EEKK 624
E K
Sbjct: 695 ENAK 698
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/106 (22%), Positives = 43/106 (40%)
Frame = +1
Query: 436 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 615
+ EEK +R E KR+A +A ++A + +K + + + K + ++
Sbjct: 652 EAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADK 711
Query: 616 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEE 753
+I S PL +VD +Q E + K + EK E
Sbjct: 712 NPEIKSS---APLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.20
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +3
Query: 699 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 833
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 30.7 bits (66), Expect = 0.27
Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 5/133 (3%)
Frame = +1
Query: 439 IEEKRQRLE--EAEKKRQAMLQAMKD--ASKTGPNFTIQKKSENFGLSNAQLERNKTKEQ 606
+EE R+ + A Q +LQA ++ A + + + EN +L++ + KE+
Sbjct: 537 MEEGRRMFQIFAARLFEQRVLQAYREKVAQQRQAKLLEEIEEENKRKQERELKKIREKEK 596
Query: 607 LEEEKKISLSIRIKPLTIEGLSVDKL-RQKAQELWECIVKLETEKYDLEERQKRQDYDLK 783
++KK L + K + ++L Q AQ+ E + E K E+R KR+ +
Sbjct: 597 KRDKKK-QLKLA-KEEERQRREAERLAEQAAQKALEAKRQEEARKKREEQRLKREQEKKQ 654
Query: 784 ELKERQKQQLRHK 822
+ ERQK++ + K
Sbjct: 655 QELERQKREEKQK 667
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.35
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 436 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 603
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 604 QLEEEKKISLSIRIKPLT 657
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 29.9 bits (64), Expect = 0.47
Identities = 25/128 (19%), Positives = 59/128 (46%)
Frame = +1
Query: 439 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 618
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 619 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKER 798
S+ + +E LS Q++Q + E K + E DL+E ++ ++ K ER
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNW-ER 190
Query: 799 QKQQLRHK 822
+++ +++
Sbjct: 191 ERETFQNQ 198
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.47
Identities = 19/72 (26%), Positives = 42/72 (58%)
Frame = +1
Query: 592 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 771
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 772 YDLKELKERQKQ 807
+ L +L++ +++
Sbjct: 221 HVLVDLEKVKRK 232
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.4
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 460 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 621
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +1
Query: 553 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 729
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 730 TEKYDLE 750
+ D++
Sbjct: 425 KDLADVD 431
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 1.9
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +1
Query: 439 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 618
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 619 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 717
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.5
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 448 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 618
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 3.3
Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = +1
Query: 607 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 786
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 787 LKERQK--QQLRHK 822
+E + ++LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.3
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 526 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 669
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 288 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 172
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.7
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 678 QTPTEGPGTLGVHRQTRDREIRSRREAK 761
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.7
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 712 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 590
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +1
Query: 580 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 744
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 745 ---LEERQKRQDYDLKELKERQ 801
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 7.6
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 439 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 618
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 619 KKISLSIRI 645
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.6
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 442 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 615
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 616 EKKI 627
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.6
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +1
Query: 538 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 714
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 715 IVKLETEKYDLEERQKRQDYDLKELKERQKQ 807
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 103 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVES 2
CW I G S L+ AL+L PA+ NV S
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLS 325
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +1
Query: 709 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 807
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.314 0.130 0.361
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,279,269
Number of Sequences: 5004
Number of extensions: 34149
Number of successful extensions: 184
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 162
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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