Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30094X
         (520 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26361| Best HMM Match : fn3 (HMM E-Value=0)                         30   1.3  
SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.3  
SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)                  28   4.0  
SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_42471| Best HMM Match : FlaC_arch (HMM E-Value=0.57)                27   7.0  
SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)            27   7.0  
SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)             27   7.0  
SB_26745| Best HMM Match : ARID (HMM E-Value=4.4)                      27   7.0  
SB_16869| Best HMM Match : Cytochrom_C_2 (HMM E-Value=4.5)             27   7.0  
SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)         27   9.3  
SB_52783| Best HMM Match : FlaC_arch (HMM E-Value=0.53)                27   9.3  
SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)                      27   9.3  

>SB_26361| Best HMM Match : fn3 (HMM E-Value=0)
          Length = 1898

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
 Frame = -2

Query: 507  LKLGSTTNPSNERIAYGDGVDKHTDLVSWKFITLWENNRVYFKAHNTKYNQYLKMS---- 340
            L+ GST   S++ IA       +T L S  F       R Y  AH T Y  YL +S    
Sbjct: 868  LESGSTLLASDDGIAPNKRTKVYTSLSSDVFY------RFYVYAHTT-YTTYLCLSVNAP 920

Query: 339  -TSTCNCNARDRVV 301
             T  C  N+RDRV+
Sbjct: 921  CTQACRLNSRDRVL 934


>SB_9107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 46

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = -1

Query: 244 VRKRRPVLHLQPRIQRCLGARYDRERLGRPQGRW 143
           V +RRP       IQR L +  DR+ LGR Q RW
Sbjct: 9   VIRRRPGGKAFTCIQRFLSSTNDRDLLGRQQSRW 42


>SB_8264| Best HMM Match : 7tm_1 (HMM E-Value=4.5e-06)
          Length = 309

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 16/27 (59%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = -1

Query: 217 LQPRIQRCLGA-RYDRERLGRPQGRWT 140
           LQPRI RC GA RYD  +  R  GR T
Sbjct: 210 LQPRISRCPGARRYDMHK-ARESGRET 235


>SB_45447| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 94  NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 153

Query: 192 LE 187
           +E
Sbjct: 154 IE 155


>SB_42471| Best HMM Match : FlaC_arch (HMM E-Value=0.57)
          Length = 300

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 94  NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 153

Query: 192 LE 187
           +E
Sbjct: 154 IE 155


>SB_31815| Best HMM Match : Lipase_GDSL (HMM E-Value=0.0024)
          Length = 1163

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 217 NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 276

Query: 192 LE 187
           +E
Sbjct: 277 IE 278


>SB_9411| Best HMM Match : Exo_endo_phos (HMM E-Value=0.19)
          Length = 891

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 90  NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 149

Query: 192 LE 187
           +E
Sbjct: 150 IE 151


>SB_26745| Best HMM Match : ARID (HMM E-Value=4.4)
          Length = 218

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 94  NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 153

Query: 192 LE 187
           +E
Sbjct: 154 IE 155


>SB_16869| Best HMM Match : Cytochrom_C_2 (HMM E-Value=4.5)
          Length = 182

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 94  NTNSGNNKNAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 153

Query: 192 LE 187
           +E
Sbjct: 154 IE 155


>SB_16098| Best HMM Match : Abhydrolase_1 (HMM E-Value=4.5e-22)
          Length = 863

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = -1

Query: 430 RQLEVHYLVGEQQSVLQGPQH*VQPVLEDEYVDLQLQR 317
           RQ+ + ++VG +  V     + ++ + ED +VD+Q+ R
Sbjct: 786 RQVPISFIVGARSWVNNESSYEIKRIREDSFVDIQVIR 823


>SB_52783| Best HMM Match : FlaC_arch (HMM E-Value=0.53)
          Length = 300

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 15/62 (24%), Positives = 21/62 (33%)
 Frame = -2

Query: 372 NTKYNQYLKMSTSTCNCNARDRVVYGGNSADSTREQWFFQPAKYENDVLFFIYNREFNDA 193
           NT         T T    A + +       D  + +     A+YE    F    REFN  
Sbjct: 94  NTNSGNNENAETETDQAEAGEEISQSSKKQDEEKGEKAMHDARYEEIEAFMATQREFNSK 153

Query: 192 LE 187
           +E
Sbjct: 154 IE 155


>SB_26001| Best HMM Match : HEAT (HMM E-Value=3.6)
          Length = 450

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
 Frame = -2

Query: 498 GSTTNPSNERIAYG--DGVDKHTDLVSWKFITLWENNRVYFKAHNTKYNQYLKMSTSTCN 325
           G   +PS+E    G  DG++  +D ++    T  E +R     H TK N YLK+     +
Sbjct: 23  GMEESPSSEVDVEGGQDGLES-SDYIA-PVGTTKEYSRNLTPTHQTKKNLYLKLDEILID 80

Query: 324 CNARDRVVYGGNSAD 280
              R+  VY G + D
Sbjct: 81  ALHREFEVYPGATVD 95


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,834,830
Number of Sequences: 59808
Number of extensions: 264375
Number of successful extensions: 869
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 869
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)