Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30094X
         (520 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g62220.1 68418.m07813 exostosin family protein contains Pfam ...    30   0.81 
At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase f...    28   3.3  
At4g16050.1 68417.m02435 expressed protein                             28   3.3  
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   7.6  
At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329...    27   7.6  

>At5g62220.1 68418.m07813 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 517

 Score = 30.3 bits (65), Expect = 0.81
 Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
 Frame = +2

Query: 122 PETSPSCPTAL----RSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSAL 289
           P ++PS P  L    R+P++ T +   K S NS   + NR+S  Y+A  ++HC+ ++ +L
Sbjct: 3   PVSNPSSPEHLLKKSRTPDSTTSIDR-KNSFNSLHSVGNRSS--YIAASRSHCTWLILSL 59

Query: 290 L 292
           L
Sbjct: 60  L 60


>At5g65450.1 68418.m08231 ubiquitin carboxyl-terminal hydrolase
           family protein / zinc finger (MYND type) family protein
           similar to ubiquitin-specific protease 16 (UBP16)
           [Arabidopsis thaliana] GI:11993477; contains Pfam
           profiles PF00443: Ubiquitin carboxyl-terminal hydrolase,
           PF01753: MYND finger
          Length = 731

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 19/77 (24%), Positives = 35/77 (45%)
 Frame = +2

Query: 146 TALRSPEAFTIVSSSKASLNSRL*MKNRTSFSYLAGWKNHCSLVLSALLPPYTTRSRALQ 325
           T+  S  +  + SSS   L S+   K + S +  +G K     V+    PP +++     
Sbjct: 244 TSEPSSASAAMSSSSTLLLPSKANSKPKVSQASSSGLKTSVQKVVQHFRPPQSSKKSQPS 303

Query: 326 LQVDVLIFKYWLYLVLW 376
             +D + F Y L++ L+
Sbjct: 304 SSIDEMSFSYELFVKLY 320


>At4g16050.1 68417.m02435 expressed protein
          Length = 666

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -2

Query: 255 QPAKYENDVLFFIYNREFNDALELDTIVNASGDRKAVGHDGEVSGLPE 112
           + A+ E+D    I  R  N   + D I N  G+R  +  D  VSGLP+
Sbjct: 535 ESAETEDDDNMTIAQR-INSRKKSDDIENTEGERSRLVADNNVSGLPQ 581


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = -2

Query: 300 YGGNSADSTREQWFFQPAK--YENDVLFFIYNREFNDALEL 184
           YGG S   +   + +   K  +  D LFF YN+E ND  E+
Sbjct: 193 YGGWSVYYSYYYYKWSEGKQFHVEDTLFFQYNKELNDVREI 233


>At1g31010.1 68414.m03797 expressed protein contains Pfam PF05329:
           Protein of unknown function (DUF731)
          Length = 360

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 345 MSTSTCNCNARDRVVYGGNSADSTREQW 262
           +STS+   ++R R   GGN A+ + E+W
Sbjct: 32  LSTSSTESSSRTRGGGGGNRAEKSSEEW 59


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,544,561
Number of Sequences: 28952
Number of extensions: 176976
Number of successful extensions: 527
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)