Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30093
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical pr...    29   4.9  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   8.5  

>Z99283-1|CAB16536.2|  414|Caenorhabditis elegans Hypothetical
           protein Y70C5C.2 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 21/86 (24%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
 Frame = -1

Query: 594 IVKKYFPLSFRLIMAGNYVKLIYRNYNLALKLGS-TTNPSNERIAYGDG-------VDKH 439
           I    FP+++  I + NY+     +YN+ LK     T+  N+ +   DG       + K+
Sbjct: 312 ITSPNFPMNYNNITSCNYLLTTLGSYNVMLKFNKFYTDMKNDFVTLYDGDSTKSPVIAKY 371

Query: 438 TDLVSWKFITLWENNR--VYFKAHNT 367
           +    W F  +   N   V F++++T
Sbjct: 372 SGYYEWPFFNVSTGNSMLVTFRSNST 397


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
           protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 18/66 (27%), Positives = 30/66 (45%)
 Frame = -2

Query: 773 TNCTTASSPVTTTVLYVRAWNTRAKARAASFKM*LTI*SLTRDGTPWSTATSCGSATDRI 594
           T  TTA+S   +T     +  T +   + +     +  S T + T  ST  S  ++TD  
Sbjct: 190 TTTTTATSTTESTSTSTDSTTTESTTESTTESTSTSTDSTTTESTTESTTESTSTSTDST 249

Query: 593 LSKSTS 576
            ++STS
Sbjct: 250 TTESTS 255


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,868,013
Number of Sequences: 27780
Number of extensions: 325658
Number of successful extensions: 924
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)