Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30092
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 59 7e-10
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 38 0.002
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 35 0.016
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 33 0.065
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 31 0.20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 29 0.80
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 28 1.4
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 28 1.9
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 27 4.3
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 4.3
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 27 4.3
SPBP8B7.07c |set6||histone lysine methyltransferase Set6 |Schizo... 26 5.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 26 7.5
SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 59.3 bits (137), Expect = 7e-10
Identities = 24/29 (82%), Positives = 29/29 (100%)
Frame = +2
Query: 740 DDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
++++AALV+DNGSGMCKAGFAGDDAPRAV
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAV 30
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 37.9 bits (84), Expect = 0.002
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = +2
Query: 746 DVAALVVDNGSGMCKAGFAGDDAPRAV 826
D + +DNGSG KAGFAGDD P+ +
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCL 34
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 34.7 bits (76), Expect = 0.016
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
D+V+A+V+D GS + GF+G+D P+ V
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCV 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 32.7 bits (71), Expect = 0.065
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +2
Query: 758 LVVDNGSGMCKAGFAGDDAPRAV 826
+++DNG+G K G+AG+DAP V
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYV 30
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 31.1 bits (67), Expect = 0.20
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +2
Query: 752 AALVVDNGSGMCKAGFAGDDAPR 820
A +V+DNG+G K G+A D+ PR
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPR 26
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.1 bits (62), Expect = 0.80
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 728 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
F+ +D+ LV+DNGS +AG+ G+ P+ V
Sbjct: 18 FQNVSNDIP-LVIDNGSWQLRAGWGGEKDPKLV 49
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 28.3 bits (60), Expect = 1.4
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+++ +LV+D GS + G+AG+++P +
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTI 35
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 27.9 bits (59), Expect = 1.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 268 LFHLNISLTINTFLHNIVHLKNL 336
L HLN S +N FLH++++ N+
Sbjct: 150 LLHLNSSSKLNAFLHDLINAPNV 172
>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 676
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -3
Query: 502 LFSEPCKRCSCHLHHTSLLPPAW 434
LF EP + HL+HTS++ W
Sbjct: 60 LFEEPVGKGDSHLNHTSVMTGNW 82
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.3
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 607 KVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFS 494
K EN+H +L P+L + WLH V+L+S
Sbjct: 613 KFAENSHLILLDMVDVGKPDLVLTLLCRWLH-MVHLYS 649
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +1
Query: 193 FISTTV*VYEFQLTIGNSGCKIIGPLFHLNISLTINTFLHNIVHLKNL 336
F+S + VYE + NS I +F + + N ++N+V L+NL
Sbjct: 136 FVSFELSVYETDALLKNSATSIYKAVFPDLVQVLPNPEINNLVILRNL 183
>SPBP8B7.07c |set6||histone lysine methyltransferase Set6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 26.2 bits (55), Expect = 5.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = -2
Query: 299 LIVKLMLRWNKGPIILQPL 243
L+++L L W K P I++P+
Sbjct: 105 LLIRLYLLWQKNPAIIEPM 123
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 7.5
Identities = 8/19 (42%), Positives = 15/19 (78%)
Frame = -3
Query: 475 SCHLHHTSLLPPAWRDFRT 419
+C++++ S LPP++ DF T
Sbjct: 467 ACYINNNSYLPPSYMDFYT 485
>SPAC5D6.04 |||auxin family transmembrane transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 9.9
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = +1
Query: 409 MFLMYGSPSTLVATEMCDVN 468
+FL+ GSP+ + T++C +N
Sbjct: 395 IFLLVGSPTAIQLTQICQLN 414
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,222,269
Number of Sequences: 5004
Number of extensions: 63770
Number of successful extensions: 159
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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