Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30092
         (828 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56628| Best HMM Match : Actin (HMM E-Value=0)                       71   2e-12
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)               66   3e-11
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   1e-10
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)              63   2e-10
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)               63   2e-10
SB_56| Best HMM Match : Actin (HMM E-Value=0)                          62   7e-10
SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)              45   7e-05
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)              41   0.001
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          38   0.010
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)                  37   0.023
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)                 36   0.030
SB_58410| Best HMM Match : Umbravirus_LDM (HMM E-Value=5.8)            30   2.6  
SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.6  
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)               29   3.5  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 29   3.5  
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)                    29   6.1  
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.1  
SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)                29   6.1  
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 31/31 (100%), Positives = 31/31 (100%)
 Frame = +2

Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1   MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 31


>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           M DDD+AALV+DNGSGMCKAGFAGDDAPRAV
Sbjct: 1   MADDDIAALVIDNGSGMCKAGFAGDDAPRAV 31


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +2

Query: 740 DDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           DDDVAALV+DNGSGMCKAGFAGDDAPRAV
Sbjct: 2   DDDVAALVIDNGSGMCKAGFAGDDAPRAV 30


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/31 (90%), Positives = 30/31 (96%)
 Frame = +2

Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           M DD++AALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1   MEDDEIAALVVDNGSGMCKAGFAGDDAPRAV 31


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score = 63.3 bits (147), Expect = 2e-10
 Identities = 28/29 (96%), Positives = 29/29 (100%)
 Frame = +2

Query: 740 DDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           +DDVAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 2   EDDVAALVVDNGSGMCKAGFAGDDAPRAV 30


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score = 61.7 bits (143), Expect = 7e-10
 Identities = 27/29 (93%), Positives = 29/29 (100%)
 Frame = +2

Query: 740 DDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           +D+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 2   EDEVAALVVDNGSGMCKAGFAGDDAPRAV 30


>SB_56369| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 20/47 (42%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 523 WLHSYVNLFSEPCKRCSCHLHHTS---LLPPAWRDFRTLETFHDECK 392
           WL S+  +FS  C +C+ HL   S   LLPP WR    L  +H  CK
Sbjct: 279 WLDSFHGMFSRKCTKCNQHLKEESENALLPPCWRTMDALLPYHYSCK 325


>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/29 (55%), Positives = 24/29 (82%)
 Frame = -3

Query: 826 DGAGRVVAGETGLAHAGAIVDYKRSNIVV 740
           +G+G +V+GETGLAH GAI+D +  +I+V
Sbjct: 11  NGSGSIVSGETGLAHTGAIIDNQSCDIIV 39


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 37.9 bits (84), Expect = 0.010
 Identities = 14/23 (60%), Positives = 19/23 (82%)
 Frame = +2

Query: 758  LVVDNGSGMCKAGFAGDDAPRAV 826
            +V+DNGSG CKAG + D++PR V
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVV 2119


>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
          Length = 1392

 Score = 36.7 bits (81), Expect = 0.023
 Identities = 16/23 (69%), Positives = 18/23 (78%)
 Frame = +2

Query: 758  LVVDNGSGMCKAGFAGDDAPRAV 826
            LV+D GS M K GFAGDDAP+ V
Sbjct: 1359 LVIDVGSHMWKVGFAGDDAPKGV 1381


>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
          Length = 921

 Score = 36.3 bits (80), Expect = 0.030
 Identities = 16/33 (48%), Positives = 21/33 (63%)
 Frame = +2

Query: 728 FKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
           FK+      A+V+DNG G+ K GFAGD  PR +
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRII 725


>SB_58410| Best HMM Match : Umbravirus_LDM (HMM E-Value=5.8)
          Length = 341

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 498 SVSHVNDAVVIYITHLCCHQRGGTSVH*KHFTMSASNSHCG 376
           +V HVN+ + +  T  C  ++G T+ H        S  HCG
Sbjct: 99  TVGHVNETLWVTSTKHCGSRQGNTAGHFNETLWVTSTKHCG 139


>SB_10273| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 739

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 729 SRCATTMLLRL*STM-APACARPVSPATTRPAP 824
           S C  T+L+R   T+ APA  +P+SPAT    P
Sbjct: 632 SSCLATLLVRPLETIPAPAPTKPISPATPASGP 664


>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
          Length = 697

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +3

Query: 729 SRCATTMLLR-L*STMAPACARPVSPATTRPAP 824
           S C  T+L+R L +T APA   P SPAT    P
Sbjct: 21  SSCLATLLVRPLETTPAPAPTTPTSPATPASGP 53


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 526 TWLHSYVNLFSEPCKRCSCHLHHTS 452
           TW+ +       PC+RC CH H  S
Sbjct: 305 TWMPATSETEPNPCERCECHSHADS 329


>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
          Length = 682

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = +3

Query: 720 TQSSRCATTMLLRL*STM-APACARPVSPATTRPAP 824
           T  S C  T+L+R   T+ APA   P SPAT    P
Sbjct: 109 TSLSSCLATLLVRPLETIPAPAPTTPTSPATPASGP 144


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 238 GNSGCKIIGPLFHLNISLTI 297
           GNSG   + P+FHLN + TI
Sbjct: 159 GNSGISALAPIFHLNHTATI 178


>SB_537| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score = 28.7 bits (61), Expect = 6.1
 Identities = 18/50 (36%), Positives = 31/50 (62%), Gaps = 2/50 (4%)
 Frame = +2

Query: 71  THLKIKQLVHTQFKLYILIQYY-LEFMML*YS-TLLIQIIRYTLLVLQFR 214
           T+ ++  LV T ++L +L+ Y+ L  ++  Y  TLL++  R TLLV  +R
Sbjct: 95  TYYRLTLLV-THYRLTLLVTYFCLTLLVTCYRLTLLVRYYRLTLLVTYYR 143


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 752 AALVVDNGSGMCKAGFAGDDAP 817
           + +V DNG+G  K G+AG + P
Sbjct: 7   SVIVCDNGTGFVKCGYAGSNFP 28


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,236,607
Number of Sequences: 59808
Number of extensions: 473319
Number of successful extensions: 1007
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1004
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2323539746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)