Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30092
(828 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 71 1e-12
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 71 1e-12
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 71 1e-12
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 69 4e-12
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 69 4e-12
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 69 4e-12
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 69 4e-12
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 69 4e-12
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 69 4e-12
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 69 4e-12
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 69 4e-12
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 69 4e-12
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 60 3e-09
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 36 0.047
U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protei... 32 0.44
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 30 1.8
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 30 1.8
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 30 2.3
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 30 2.3
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 29 3.1
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 31
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 31
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 70.5 bits (165), Expect = 1e-12
Identities = 31/31 (100%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 31
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 29/31 (93%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAV 31
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 68.9 bits (161), Expect = 4e-12
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAV 31
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 59.7 bits (138), Expect = 3e-09
Identities = 25/29 (86%), Positives = 29/29 (100%)
Frame = +2
Query: 740 DDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
++++AALVVDNGSGMCKAGFAGDDAPRAV
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAV 30
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 35.5 bits (78), Expect = 0.047
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Frame = +2
Query: 740 DDDVAA---LVVDNGSGMCKAGFAGDDAPR 820
D DV A +V+DNGSG+ KAGFAG+ P+
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPK 31
>U41746-6|AAA83333.1| 388|Caenorhabditis elegans Mediator protein
27 protein.
Length = 388
Score = 32.3 bits (70), Expect = 0.44
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = -3
Query: 628 SRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFM---TWLHSYVNLFSEPCKRCSCHLHH 458
S+ V+R+ T++A +L SP A +F ++ SYVN FS C C HL
Sbjct: 305 SKRKVYREFTKSAKEIIL--CSPVTKFTAPTNFAQCNNYIQSYVNCFSTKCYYCKKHLR- 361
Query: 457 TSLLPP 440
+PP
Sbjct: 362 -QFMPP 366
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +1
Query: 373 NTTMTIACTHREMFLMYGSPSTLVATEMCDVNDNCI 480
NT + I CTH+ +FL++ SP+ + M +NC+
Sbjct: 242 NTHLLILCTHKMIFLLF-SPNFHQSIFMLSTQNNCV 276
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 30.3 bits (65), Expect = 1.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 734 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAV 826
M + A V+DNG+G K G+AG+ P+ +
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFI 31
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/13 (92%), Positives = 13/13 (100%)
Frame = +2
Query: 788 KAGFAGDDAPRAV 826
+AGFAGDDAPRAV
Sbjct: 5 RAGFAGDDAPRAV 17
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 29.9 bits (64), Expect = 2.3
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPR 820
D+V+ LV D GS + GFAG++ P+
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPK 34
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 29.5 bits (63), Expect = 3.1
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 758 LVVDNGSGMCKAGFAGDDAP 817
+VVDNG+G K G+AG + P
Sbjct: 9 IVVDNGTGFVKCGYAGTNFP 28
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,172,589
Number of Sequences: 27780
Number of extensions: 367582
Number of successful extensions: 820
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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