Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30092
(828 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-06
At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292 A... 50 2e-06
At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293 A... 50 2e-06
At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494 A... 49 3e-06
At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to S... 49 3e-06
At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493 A... 49 3e-06
At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497... 49 3e-06
At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496... 49 3e-06
At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671 A... 49 3e-06
At2g42100.1 68415.m05205 actin, putative very strong similarity ... 49 4e-06
At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identica... 46 4e-05
At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary id... 46 4e-05
At3g09180.1 68416.m01090 expressed protein 42 5e-04
At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Ac... 36 0.043
At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly i... 32 0.53
At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identica... 31 1.2
At4g27520.1 68417.m03952 plastocyanin-like domain-containing pro... 29 2.8
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 28 8.7
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino... 28 8.7
>At3g18780.2 68416.m02386 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 377
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
DD+ +V DNG+GM KAGFAGDDAPRAV
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAV 32
>At3g18780.1 68416.m02385 actin 2 (ACT2) identical to SP|Q96292
Actin 2 {Arabidopsis thaliana}; nearly identical to
SP|Q96293 Actin 8 [Arabidopsis thaliana] GI:1669387 and
to At1g49240
Length = 371
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
DD+ +V DNG+GM KAGFAGDDAPRAV
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAV 32
>At1g49240.1 68414.m05520 actin 8 (ACT8) identical to SP|Q96293
Actin 8 {Arabidopsis thaliana}; nearly identical to
SP|Q96292 Actin 2 [Arabidopsis thaliana] GI:1669387, and
to At3g18780
Length = 377
Score = 50.0 bits (114), Expect = 2e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
DD+ +V DNG+GM KAGFAGDDAPRAV
Sbjct: 5 DDIQPIVCDNGTGMVKAGFAGDDAPRAV 32
>At5g59370.1 68418.m07440 actin 4 (ACT4) identical to SP|P53494
Actin 4 {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At5g09810.1 68418.m01135 actin 7 (ACT7) / actin 2 identical to
SP|P53492 Actin 7 (Actin-2) {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At3g53750.1 68416.m05938 actin 3 (ACT3) identical to SP|P53493
Actin 3 {Arabidopsis thaliana}; supported by full-length
cDNA: Ceres: 19581.
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At3g46520.1 68416.m05050 actin 12 (ACT12) identical to SP|P53497
Actin 12 {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At3g12110.1 68416.m01507 actin 11 (ACT11) identical to SP|P53496
Actin 11 {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At2g37620.1 68415.m04615 actin 1 (ACT1) identical to SP|P10671
Actin 1 (Actin 3) {Arabidopsis thaliana}
Length = 377
Score = 49.2 bits (112), Expect = 3e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
+D+ LV DNG+GM KAGFAGDDAPRAV
Sbjct: 5 EDIQPLVCDNGTGMVKAGFAGDDAPRAV 32
>At2g42100.1 68415.m05205 actin, putative very strong similarity to
SP|P53496 Actin 11 {Arabidopsis thaliana}, SP|P53493
Actin 3 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 378
Score = 48.8 bits (111), Expect = 4e-06
Identities = 21/28 (75%), Positives = 24/28 (85%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
D+ A+V DNG+GM KAGFAGDDAPRAV
Sbjct: 6 DESVAIVCDNGTGMVKAGFAGDDAPRAV 33
>At1g73910.1 68414.m08559 actin-related protein 5 (ARP5) identical
to actin-related protein 5 (ARP5) GI:21489922 from
[Arabidopsis thaliana]
Length = 145
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
D+V+A+VVD GS CKAG+AG+DAP+AV
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAV 32
>At1g18450.1 68414.m02302 actin-related protein 4 (ARP4) neary
identical to actin-related protein 4 (ARP4) [Arabidopsis
thaliana] GI:21427463; contains Pfam profile PF00022:
Actin; supporting cDNA gi|21427462|gb|AF507912.1|
Length = 441
Score = 45.6 bits (103), Expect = 4e-05
Identities = 19/28 (67%), Positives = 25/28 (89%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
D+V+A+VVD GS CKAG+AG+DAP+AV
Sbjct: 5 DEVSAIVVDLGSHTCKAGYAGEDAPKAV 32
>At3g09180.1 68416.m01090 expressed protein
Length = 402
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 13/93 (13%)
Frame = -3
Query: 628 SRHHVFRKVTENAHAAMLHFYSPTLPELAVRSFMTWLHSYVNLFSEPCKRCSCHL----H 461
S +HV++ +TE+A A+ +F A+ S + W+ S+ ++FS+PC +C L
Sbjct: 308 SVYHVYKHITEHAATALQYFLGFGTGT-ALYSLLLWICSFESVFSKPCTKCGRLLAMDKK 366
Query: 460 HTSLLPPAWRDFRTL---------ETFHDECKQ 389
+LPP R ++ L E +H C Q
Sbjct: 367 SALILPPLHRAYQELPLALNLDVCEAYHSSCSQ 399
>At2g42090.1 68415.m05204 actin, putative similar to SP|P53496 Actin
11 {Arabidopsis thaliana}; contains Pfam profile
PF00022: Actin
Length = 366
Score = 35.5 bits (78), Expect = 0.043
Identities = 14/23 (60%), Positives = 18/23 (78%)
Frame = +2
Query: 758 LVVDNGSGMCKAGFAGDDAPRAV 826
+V D G GM +AGFAGD+AP+ V
Sbjct: 4 IVCDKGHGMVQAGFAGDEAPKVV 26
>At3g27000.1 68416.m03378 actin-related protein 2 (ARP2) nearly
identical to actin-related protein 2 (ARP2) [Arabidopsis
thaliana] GI:3818624; contains Pfam profile PF00022:
Actin
Length = 389
Score = 31.9 bits (69), Expect = 0.53
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 743 DDVAALVVDNGSGMCKAGFAGDDAPRAV 826
D+ +V DNG+G K GFAG++ P +V
Sbjct: 2 DNKNVVVCDNGTGYVKCGFAGENFPTSV 29
>At1g13180.1 68414.m01528 actin-related protein 3 (ARP3) identical
to actin-related protein 3 (ARP3) [Arabidopsis thaliana]
GI:21427461; contains Pfam profile PF00022: Actin
Length = 427
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = +2
Query: 755 ALVVDNGSGMCKAGFAGDDAP 817
A+V+DNG+G K GFAG+ P
Sbjct: 8 AIVIDNGTGYTKMGFAGNVEP 28
>At4g27520.1 68417.m03952 plastocyanin-like domain-containing
protein similar to PIR|JC7196 phytocyanin-related
protein Pn14 {Ipomoea nil}; contains Pfam profile
PF02298: Plastocyanin-like domain
Length = 349
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +3
Query: 705 PQHKHTQSSRCATTMLLRL*STMAPACARPVSPATTRPAP 824
P H+ S A + +MAP PVSP T+ PAP
Sbjct: 181 PGGAHSPKSSSAVSPATSPPGSMAPKSGSPVSPTTSPPAP 220
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 27.9 bits (59), Expect = 8.7
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 758 LVVDNGSGMCKAGFAGDDAPRAV 826
+V+DNG+ + G+AG+ PR V
Sbjct: 22 IVIDNGASYFRIGWAGETEPRVV 44
>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
oxidoreductase family protein contains Pfam profile:
PF05187 Electron transfer flavoprotein-ubiquinone
oxidoreductase
Length = 633
Score = 27.9 bits (59), Expect = 8.7
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = +3
Query: 315 YCPFKKFIVLNERTGSPHIQYHNDYCLH 398
YCP + + + + G P +Q + CLH
Sbjct: 577 YCPARVYEYIEDEEGKPKLQINAQNCLH 604
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,690,013
Number of Sequences: 28952
Number of extensions: 324669
Number of successful extensions: 684
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1902108000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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