Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30091
(912 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 33 0.056
SPBC530.01 |gyp1||GTPase activating protein Gyp1 |Schizosaccharo... 31 0.17
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 30 0.40
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac... 30 0.40
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 30 0.52
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom... 29 0.69
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 1.2
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 29 1.2
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 28 1.6
SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr 1||... 28 1.6
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 28 1.6
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 28 2.1
SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyce... 27 2.8
SPAC21E11.03c |pcr1|mts2|transcription factor Pcr1|Schizosacchar... 27 4.9
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 27 4.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 26 6.5
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |... 26 6.5
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 8.5
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos... 26 8.5
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 26 8.5
SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit Psm3|Sch... 26 8.5
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 33.1 bits (72), Expect = 0.056
Identities = 23/68 (33%), Positives = 39/68 (57%)
Frame = -1
Query: 849 KKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLV 670
K+A ++ EQR+RE E + ++R A+ ++ RK E R+K + E++RK E M+
Sbjct: 257 KRAREEEEQRIREEEARIAEEEKRLAEVEE-ARKEEARLK----KKEKERKKKEEMKAQG 311
Query: 669 DKLQQKIK 646
L +K K
Sbjct: 312 KYLSKKQK 319
>SPBC530.01 |gyp1||GTPase activating protein Gyp1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 31.5 bits (68), Expect = 0.17
Identities = 18/51 (35%), Positives = 27/51 (52%)
Frame = -1
Query: 810 LENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQ 658
L LDG Q + AQ +R+ ++ELT + +E H +M+ VD LQ
Sbjct: 364 LSKLLDGIQDNYIHAQPGIRRQVNNLRELTLRIDEPLVKHLQMEG-VDFLQ 413
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/84 (23%), Positives = 40/84 (47%)
Frame = -1
Query: 882 DEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEED 703
D AE + +G +K+ + E++ + L+G + AD K + +E + + F+ EE+
Sbjct: 49 DYAEESGGEGNEKSEDEFEEKFKN-PYRLEGKFKDEADRAKIMAMTEIERESILFEREEE 107
Query: 702 RKNHERMQDLVDKLQQKIKTYKRQ 631
++L +L Q+ Y Q
Sbjct: 108 ISKLMERRELAIRLHQQNAQYMAQ 131
>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 30.3 bits (65), Expect = 0.40
Identities = 20/90 (22%), Positives = 39/90 (43%)
Frame = -1
Query: 909 QIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIK 730
Q + ++RLD A + K+ +E+R L+++ +RRH D + R +
Sbjct: 128 QDTQAKLRLDPLLAIKQQEQKQLQTLMEKRKYSLDSDRKSKERRHRDRHHRSNQDRSRER 187
Query: 729 ELTFQAEEDRKNHERMQDLVDKLQQKIKTY 640
Q D++ H R D+ + +T+
Sbjct: 188 SDNEQHSSDKREHSRRSYRNDRNNWRERTH 217
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 29.9 bits (64), Expect = 0.52
Identities = 21/73 (28%), Positives = 33/73 (45%)
Frame = -1
Query: 849 KKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLV 670
K A Q+ + + E+E E Q R + K + K+L EE+R+ E + L
Sbjct: 563 KVAQQRQAKLLEEIEEENKRKQERELKKIREKEKKRDKKKQLKLAKEEERQRRE-AERLA 621
Query: 669 DKLQQKIKTYKRQ 631
++ QK KRQ
Sbjct: 622 EQAAQKALEAKRQ 634
Score = 28.7 bits (61), Expect = 1.2
Identities = 16/86 (18%), Positives = 45/86 (52%)
Frame = -1
Query: 894 QVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQ 715
Q L+ + + K+ +KL+++ +E + E ++R + ++ ER+ +E +
Sbjct: 654 QQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDK 713
Query: 714 AEEDRKNHERMQDLVDKLQQKIKTYK 637
EE+R+ E ++ ++ +++++ K
Sbjct: 714 EEEERRRRELLEKESEEKERRLREAK 739
>SPAC16A10.08c |mug74|SPAC589.01c|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 285
Score = 29.5 bits (63), Expect = 0.69
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 4/65 (6%)
Frame = -1
Query: 834 KLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNH----ERMQDLVD 667
K +++ELEN L ++R+ + +K +R+ ++ +KEL Q +K QD++D
Sbjct: 219 KDSNQIQELENLLRKEKQRNTEHEKIIRRMKKELKELHSQFNFAKKLFISALSANQDILD 278
Query: 666 KLQQK 652
K+ +
Sbjct: 279 KMNDE 283
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/86 (25%), Positives = 43/86 (50%)
Frame = -1
Query: 909 QIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIK 730
Q+ EL+ +L A L+ + + + RVR LENEL + + Q+ + +++ I+
Sbjct: 413 QLAELEQQL-LATRGQLEQSNVLLNQYDARVRTLENEL---SQAGVNLQEQIHQNDDLIE 468
Query: 729 ELTFQAEEDRKNHERMQDLVDKLQQK 652
L Q + +E + L +L+Q+
Sbjct: 469 SLKNQILTWKNKYEALAKLYTQLRQE 494
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 28.7 bits (61), Expect = 1.2
Identities = 19/83 (22%), Positives = 42/83 (50%), Gaps = 4/83 (4%)
Frame = -1
Query: 903 KELQVRLDEAEANALKGGKKAIQ----KLEQRVRELENELDG*QRRHADAQKNLRKSERR 736
++ +R EA+ + KK IQ +LE+R +L N+L+ Q + LR++E
Sbjct: 1999 RDRTIRQLEAQISKFDDDKKRIQSSVSRLEERNAQLRNQLEDVQASETQWKFALRRTEHA 2058
Query: 735 IKELTFQAEEDRKNHERMQDLVD 667
++E + + + ++ + L++
Sbjct: 2059 LQEERERVKSLETDFDKYRSLLE 2081
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 28.3 bits (60), Expect = 1.6
Identities = 20/88 (22%), Positives = 42/88 (47%)
Frame = -1
Query: 909 QIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIK 730
Q+++ + R +E +L + ++ +R+ E E+ Q + + + ERRI
Sbjct: 819 QLEDTRYRQHLSELESLN---QRFTEISERIPSAELEISKLQLDVSACDRLVAGEERRIL 875
Query: 729 ELTFQAEEDRKNHERMQDLVDKLQQKIK 646
+L + R N+ER ++L +K+ K
Sbjct: 876 QLKSDLKSIRNNNERKRNLQNKISNMDK 903
>SPAC6F12.03c |fsv1||SNARE Fsv1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 247
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/72 (22%), Positives = 37/72 (51%)
Frame = -1
Query: 912 QQIKELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRI 733
++++E DE ++LK ++ +QKL + LE + R +++ L + +RR+
Sbjct: 19 RKLEEFGQNPDEEIESSLKDVRQELQKLNEEQSRLEKNAQIPEYRVRESEAFLIRMQRRL 78
Query: 732 KELTFQAEEDRK 697
+ + E+ R+
Sbjct: 79 ESAEEEFEKQRR 90
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 28.3 bits (60), Expect = 1.6
Identities = 16/66 (24%), Positives = 32/66 (48%)
Frame = -1
Query: 903 KELQVRLDEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKEL 724
+E QV++D+A + K+ +K+E RV E + + + + + + ++ R EL
Sbjct: 197 QETQVKVDQATLTHYRSDKERAEKIELRVHESLKRISCIRSKVEELDQEITETARLQDEL 256
Query: 723 TFQAEE 706
EE
Sbjct: 257 FKSTEE 262
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.9 bits (59), Expect = 2.1
Identities = 20/85 (23%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Frame = -1
Query: 882 DEAEANALKGGKKAIQKLEQRVRELENELDG*QRRHADAQKNLRKS-ERRIKELTFQAEE 706
D ++ +K + I+ LE + +++ E D + + N E I++L + +E
Sbjct: 237 DVEQSQNVKVFTERIRFLENALEKVQREKDSLSTEMEEDKSNKEVDYEYEIRQLQNRLDE 296
Query: 705 DRKNHERMQDLVDKLQQKIKTYKRQ 631
+ + QDL+ + + +I T KRQ
Sbjct: 297 LSEELDVAQDLLTEKEDEIATLKRQ 321
>SPBC3E7.08c |rad13||DNA repair nuclease Rad13|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1112
Score = 27.5 bits (58), Expect = 2.8
Identities = 13/71 (18%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Frame = -1
Query: 849 KKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERM-QDL 673
++ I ++ + +E + + +RH + N E+R+KEL Q ++++ + + Q +
Sbjct: 697 EEMIIRMAEEEKEYDRFVSELNQRHETEEWNQEAFEKRLKELKNQKRSEKRDADEVTQVM 756
Query: 672 VDKLQQKIKTY 640
+ + Q+ ++ +
Sbjct: 757 IKECQELLRLF 767
>SPAC21E11.03c |pcr1|mts2|transcription factor
Pcr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 171
Score = 26.6 bits (56), Expect = 4.9
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -1
Query: 786 QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKLQQKIKTYKRQ 631
+R A K +K + IKEL A + +R+Q L+ +LQQ+ K Q
Sbjct: 18 ERNRIAASKFRQKKKEWIKELEQTANAAFEQSKRLQLLLSQLQQEAFRLKSQ 69
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 26.6 bits (56), Expect = 4.9
Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Frame = -2
Query: 419 HLGST--WRPKISKRSTTKHKNGL 354
H GST W + RST+KH+N L
Sbjct: 417 HAGSTQEWHSHTTPRSTSKHENNL 440
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.2 bits (55), Expect = 6.5
Identities = 15/67 (22%), Positives = 34/67 (50%)
Frame = -1
Query: 849 KKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLV 670
K+ + ++++ E+ + L+ + ++N KSE K+ EE+ + + MQ V
Sbjct: 1452 KEELSSTQRKLSEIMDILNTTKEELEKVRQNSNKSEGTSKDTEIPNEEEMERKKVMQQEV 1511
Query: 669 DKLQQKI 649
+L+ +I
Sbjct: 1512 LRLRSRI 1518
>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 638
Score = 26.2 bits (55), Expect = 6.5
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = -1
Query: 813 ELENELDG*QRRHADAQKNLRKSERR-IKELTFQAEEDRKNHERMQDLVDKLQQKIKTYK 637
E ELD H K +R+S I F EE+ N + +DL+ + Q+I+ +
Sbjct: 435 ESRKELDKHSDWHFRINKRIRESSLHGINRCWFVMEEEWVNSKEEEDLITETAQEIEEQR 494
Query: 636 RQ 631
++
Sbjct: 495 QK 496
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 8.5
Identities = 25/73 (34%), Positives = 43/73 (58%)
Frame = -1
Query: 849 KKAIQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLV 670
K+ + ++++R +EL+ E + ++R A A+K +R RR QA+ DR ERM+ L
Sbjct: 42 KRKLDEIKEREKELKREKE--EQRAAHAEK-IRT--RR------QAKADR---ERMELLQ 87
Query: 669 DKLQQKIKTYKRQ 631
KL QK+ +R+
Sbjct: 88 AKLHQKVIDRRRR 100
>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 449
Score = 25.8 bits (54), Expect = 8.5
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = +3
Query: 225 SLKCIYFCLAYKKKRIAYLVFYSFSLIIN----S*CIKSYVFNEK 347
SLK + CL KK+R+A SL IN C++ +V EK
Sbjct: 268 SLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEK 312
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = -1
Query: 732 KELTFQAEEDRKNHERMQDLVDKLQQK 652
K++TF+AEE RK E+ +L ++ +K
Sbjct: 125 KQVTFKAEERRKREEKSSNLDEEELRK 151
>SPAC10F6.09c |psm3|smc3|mitotic cohesin complex subunit
Psm3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1194
Score = 25.8 bits (54), Expect = 8.5
Identities = 18/62 (29%), Positives = 33/62 (53%)
Frame = -1
Query: 840 IQKLEQRVRELENELDG*QRRHADAQKNLRKSERRIKELTFQAEEDRKNHERMQDLVDKL 661
+Q +E+R+RELE E ++ A + + +ERR E + E H+ + ++D L
Sbjct: 193 LQYIEERLRELEEE------KNDLAVYHKKDNERRCLEYAIYSRE----HDEINSVLDAL 242
Query: 660 QQ 655
+Q
Sbjct: 243 EQ 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,758,142
Number of Sequences: 5004
Number of extensions: 49267
Number of successful extensions: 243
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 241
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -