Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30091
         (912 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective...    25   0.72 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.7  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.9  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.9  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   8.9  

>AB238796-1|BAE93398.1|  128|Apis mellifera Queen brain-selective
           protein-1 protein.
          Length = 128

 Score = 25.4 bits (53), Expect = 0.72
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
 Frame = -2

Query: 164 YRGVCIE----SASECVGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTSNKAIS 15
           Y G+C E    S ++C+GC+  +     T     PH  +     +   S+ AI+
Sbjct: 75  YLGICAEGMQCSCNKCIGCSAEKFECSKTSNPCLPHRNSDRDLNIRKWSSIAIN 128


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -2

Query: 110  REHRRDTPPTSAPHTRTCTPRT 45
            R+H  +  P   PH  TCT  T
Sbjct: 1073 RQHTAEGVPEQPPHDTTCTTLT 1094


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 275 IFSILQFFAHHQQ 313
           IFS++ F AH QQ
Sbjct: 333 IFSVVGFMAHEQQ 345


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 275 IFSILQFFAHHQQ 313
           IFS++ F AH QQ
Sbjct: 386 IFSVVGFMAHEQQ 398


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = -1

Query: 771 DAQKNLRKSERRIKELTFQAE---EDRKNHERMQDLVDKLQQKIK 646
           D  +  RK +RR ++L  + E   E+R + ER     ++ Q+  K
Sbjct: 240 DRNREYRKKDRRYEKLHNEKEKLLEERTSRERYSRSREREQKSYK 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,854
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29630055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)