Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30090
(852 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 38 0.002
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 34 0.029
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.029
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 33 0.068
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 33 0.068
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 33 0.068
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.36
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 30 0.48
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 28 1.5
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.6
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 27 2.6
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.4
SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|... 27 3.4
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.4
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 27 4.5
SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|... 26 5.9
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 7.8
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 26 7.8
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 7.8
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 26 7.8
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 7.8
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 37.9 bits (84), Expect = 0.002
Identities = 35/137 (25%), Positives = 66/137 (48%), Gaps = 4/137 (2%)
Frame = +1
Query: 448 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 624
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 625 EEKKISLSIRIKPLTIEGL---SVDKLRQKAQELLGVHRQTRDREIRSRREAKETGLRLK 795
E+ K + K E + +K +++A+E R+ E +++REA+E R
Sbjct: 631 EKAKREAEEKAKREAEEKAKREAEEKAKREAEE-----NAKREAEEKAKREAEENAKR-- 683
Query: 796 RAQRKTKAATEAQSSQE 846
A+ K K TE + ++
Sbjct: 684 EAEEKVKRETEENAKRK 700
Score = 35.1 bits (77), Expect = 0.013
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Frame = +1
Query: 457 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 630
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 631 KKISLSIRIKPLTIEGL---SVDKLRQKAQELL---GVHRQTRDREIRSRREAKETGLRL 792
K + K E + +K +++A+E + R+ E +++REA+E R
Sbjct: 609 AKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR- 667
Query: 793 KRAQRKTKAATEAQSSQE 846
A+ K K E + +E
Sbjct: 668 -EAEEKAKREAEENAKRE 684
Score = 32.3 bits (70), Expect = 0.090
Identities = 29/105 (27%), Positives = 51/105 (48%), Gaps = 1/105 (0%)
Frame = +1
Query: 448 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 624
+ EEK +R E + KR+A +A ++A + ++K++ NA+ E K K + E
Sbjct: 620 EAEEKAKREAEEKAKREAEEKAKREAEEKAKR-EAEEKAKREAEENAKREAEEKAKREAE 678
Query: 625 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRS 759
E K ++K T E ++KA+E G ++ EI+S
Sbjct: 679 ENAKREAEEKVKRETEE-----NAKRKAEE-EGKREADKNPEIKS 717
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 33.9 bits (74), Expect = 0.029
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +1
Query: 550 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELLGV 726
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E V
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEE---V 81
Query: 727 HRQTRDRE-IRSRREAKETGLRLKRAQRKTKAATEAQSSQ 843
+ RD E I+ R+ K L+R + K T + +S+
Sbjct: 82 EKILRDEERIKKRKIQKNRAANLQRTLQPPKRPTPSAASE 121
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.029
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +1
Query: 454 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 633
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 634 KISL 645
K L
Sbjct: 196 KAML 199
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 32.7 bits (71), Expect = 0.068
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +2
Query: 734 KLETEKYDLEERQKRQDYDLKELKERQKQQLRHKALKK 847
K E ++ E+ +K+Q+ + ++ +E+QKQ+ R K LKK
Sbjct: 640 KREEQRLKREQEKKQQELERQKREEKQKQKEREKKLKK 677
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 32.7 bits (71), Expect = 0.068
Identities = 30/132 (22%), Positives = 57/132 (43%)
Frame = +1
Query: 451 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 630
+ + R+R E E+ R+ L+A ++ +++ + SE L + ++ E
Sbjct: 178 LNDLREREEFEERLRRKDLEAA--TNEFVEDYSSKFSSEELALRKLADDPESWRKLASEL 235
Query: 631 KKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRSRREAKETGLRLKRAQRK 810
+K S +KP + L + + + +E L + EIR + KE + QR
Sbjct: 236 RKKSRQQYLKPRAQQQLEILRREIRDEEQLFAGEKLTQAEIRELEKKKELLRIAEERQRL 295
Query: 811 TKAATEAQSSQE 846
K ATE Q ++
Sbjct: 296 EKQATEYQMPED 307
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 32.7 bits (71), Expect = 0.068
Identities = 19/65 (29%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Frame = +1
Query: 589 QLERNKTKEQLEEEKKISLSIRI---KPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRS 759
+L+R K ++Q E+EKK+ +I K +E L +++R + Q+ ++ RD+++R
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIRLQEQQR---RKEERDQKLRE 153
Query: 760 RREAK 774
+ EA+
Sbjct: 154 KEEAQ 158
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/37 (35%), Positives = 28/37 (75%), Gaps = 1/37 (2%)
Frame = +2
Query: 734 KLETEKYDLEERQKRQDYDLKELKERQK-QQLRHKAL 841
KLE E+ L+E+Q+R++ ++L+E+++ Q+LR + +
Sbjct: 129 KLEKERIRLQEQQRRKEERDQKLREKEEAQRLRQEQI 165
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.36
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +1
Query: 448 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 615
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 616 QLEEEKKISLSIRIKPLT 669
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 29.9 bits (64), Expect = 0.48
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Frame = +1
Query: 460 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 636
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 637 ISLSIRIKPLTIEGLSV-DKLRQKAQE 714
+ ++IK + EGLS+ KL K +E
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKE 109
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 28.3 bits (60), Expect = 1.5
Identities = 23/133 (17%), Positives = 59/133 (44%), Gaps = 1/133 (0%)
Frame = +1
Query: 451 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 630
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 631 KKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRD-REIRSRREAKETGLRLKRAQR 807
S+ + +E LS Q++Q + ++ ++ ++++ E E G + +R
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVREDEKKKKEIQDLKELYEKSEHGAKNWERER 192
Query: 808 KTKAATEAQSSQE 846
+T +Q S++
Sbjct: 193 ETFQNQVSQMSKQ 205
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +1
Query: 472 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 633
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +1
Query: 460 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 630
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 27.5 bits (58), Expect = 2.6
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = -2
Query: 218 SGSPSPAIDGLLSCLGAGF 162
S SPSP IDG + +G GF
Sbjct: 80 SSSPSPKIDGTAASIGMGF 98
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 3.4
Identities = 18/65 (27%), Positives = 37/65 (56%)
Frame = +1
Query: 586 AQLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRSRR 765
A L +N+ +L EE++ R+K + ++++L QK +EL +Q +++E+ ++
Sbjct: 348 ASLLQNEEFHKLIEERQRQHEERLKRINANKKALEELNQKKREL--AQQQLKEQELLMQK 405
Query: 766 EAKET 780
KET
Sbjct: 406 -IKET 409
>SPAC6F6.03c |||ribosome export GTPase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 172 PK-QESRPSIAGEGDPEFIKRQDQKRSDLDEQLKEYI 279
PK Q RP I+ + E K D+K++ +E+++E I
Sbjct: 143 PKSQRKRPKISFDSVAELAKESDEKQNAYEEKIEERI 179
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +1
Query: 538 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 681
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 26.6 bits (56), Expect = 4.5
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = +2
Query: 701 RRPRNFWECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 820
+R + E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 384 QRKTPYEEAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
>SPAC3H1.08c |||DUF1640 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 211
Score = 26.2 bits (55), Expect = 5.9
Identities = 23/99 (23%), Positives = 47/99 (47%), Gaps = 8/99 (8%)
Frame = +1
Query: 574 GLSNAQLERN---KTKEQLE--EEKKISLSIRIKPLTIEGLSVDKLRQKAQELLGVHRQT 738
G + +LE+N K K++ ++K+ L IR TIE DK+R+ + +L+ +T
Sbjct: 68 GEALTELEKNIGFKAKQESVSFQQKRTFLQIRKYLETIEENEFDKVRKSSDKLINEIEKT 127
Query: 739 RD---REIRSRREAKETGLRLKRAQRKTKAATEAQSSQE 846
+ ++++ L L++ + K A + + E
Sbjct: 128 KSSLREDVKTALSEVRLNLNLEKGRMKDAATSRNTNIHE 166
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +1
Query: 451 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 630
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 631 KKISLSIRI 657
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 25.8 bits (54), Expect = 7.8
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 752 YDLEERQKRQDYDLKELKERQKQQLRHKALKK 847
Y+ E+R KRQ+ E + R+K++ R A +K
Sbjct: 242 YEREQRAKRQEQFRLERENREKEKRRIAAQRK 273
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +1
Query: 454 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 627
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 628 EKKI 639
+++I
Sbjct: 192 DEEI 195
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 25.8 bits (54), Expect = 7.8
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = +1
Query: 451 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 630
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 631 KKIS---LSIRIKPLTIEGLSVDKLRQKAQE 714
IS L I T +G++ L E
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDE 206
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 7.8
Identities = 22/85 (25%), Positives = 41/85 (48%), Gaps = 2/85 (2%)
Frame = +1
Query: 595 ERNKTKEQLEEEKKISLSIR--IKPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRSRRE 768
E N +EQ++E+KK+S S + ++ L + L+ K + + L + EI S E
Sbjct: 491 ELNNLREQIKEQKKVSESTQSSLQSLQRDILNEKKKHEVYESQLNELKGELQTEI-SNSE 549
Query: 769 AKETGLRLKRAQRKTKAATEAQSSQ 843
+ L A+++ AT + S+
Sbjct: 550 HLSSQLSTLAAEKEAAVATNNELSE 574
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.128 0.346
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,244
Number of Sequences: 5004
Number of extensions: 35643
Number of successful extensions: 190
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 422462090
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
- SilkBase 1999-2023 -