Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30090
         (852 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    27   0.29 
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.6  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   4.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   4.7  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.2  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 26.6 bits (56), Expect = 0.29
 Identities = 20/116 (17%), Positives = 48/116 (41%)
 Frame = +1

Query: 466 QRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISL 645
           +R E   +   A    M D  +T       KKS+    ++ +LE+N+        +K+ +
Sbjct: 14  ERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNCLEKLKV 73

Query: 646 SIRIKPLTIEGLSVDKLRQKAQELLGVHRQTRDREIRSRREAKETGLRLKRAQRKT 813
            + + P T    ++  L +  + +  +  + R   +   + ++E     +R ++ T
Sbjct: 74  LVPLGPETSRHTTLGLLTKAKRFIKSLEERERKHAVHKEQLSREQRFLRRRLEQLT 129


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -3

Query: 757 IVFLGLEFDDALPEVPGPS 701
           + FLGLE    LP+VP P+
Sbjct: 256 MTFLGLEARTDLPKVPYPT 274


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 484 EKKRQAMLQAMKDASKTGPNFTIQKKSE 567
           EKKRQA L  + +A + G   T ++  E
Sbjct: 313 EKKRQAFLDLLIEAGQNGVLLTDKEVKE 340


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 4.7
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = +1

Query: 451 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFG 576
           I  + +R++  EK    +L  + +AS   PN  +     NFG
Sbjct: 327 INTRGERIQLTEKNGIDVLGNIMEASILSPNQNVYGDLHNFG 368


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/15 (60%), Positives = 9/15 (60%)
 Frame = -3

Query: 298 AVCAIR*CIPSTVHP 254
           A C I  C P TVHP
Sbjct: 357 AFCNIVSCSPQTVHP 371


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 185  VDRRSRVREIQNSSSVKTRSGRT 253
            +DR SR RE+ N    + R  +T
Sbjct: 1420 LDRSSREREVHNGGQQEDRDRKT 1442


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.128    0.346 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,825
Number of Sequences: 438
Number of extensions: 2799
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27431202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)