Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30089
(855 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 38 0.001
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 35 0.013
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc... 35 0.017
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 34 0.030
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 33 0.068
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 31 0.21
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac... 30 0.36
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 30 0.36
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 30 0.48
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc... 29 0.64
SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr ... 28 1.5
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 28 1.9
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po... 28 1.9
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc... 27 2.6
SPAC1834.07 |klp3|krp1|kinesin-like protein Klp3|Schizosaccharom... 27 3.4
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 27 4.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 27 4.5
SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|c... 26 5.9
SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces... 26 5.9
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 26 5.9
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 26 5.9
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 26 7.8
SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit Snu23|... 26 7.8
SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomy... 26 7.8
SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2 |S... 26 7.8
SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces pom... 26 7.8
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ... 26 7.8
SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit Pst... 26 7.8
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 38.3 bits (85), Expect = 0.001
Identities = 35/125 (28%), Positives = 64/125 (51%), Gaps = 1/125 (0%)
Frame = +2
Query: 464 EEAEKKRQA-MLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEKKISLSI 640
E+ ++RQA +L+ +++ +K ++K E + +R+K K+QL+ K+
Sbjct: 562 EKVAQQRQAKLLEEIEEENKRKQERELKKIREK------EKKRDK-KKQLKLAKEEERQR 614
Query: 641 RIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQHLRH 820
R E + L K QE E K E ++ E+ +K+Q+ + ++ +E+QKQ R
Sbjct: 615 REAERLAEQAAQKALEAKRQE--EARKKREEQRLKREQEKKQQELERQKREEKQKQKERE 672
Query: 821 KALKK 835
K LKK
Sbjct: 673 KKLKK 677
Score = 27.1 bits (57), Expect = 3.4
Identities = 27/136 (19%), Positives = 62/136 (45%)
Frame = +2
Query: 437 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 616
+IEE+ +R +E E K+ + +D K + K+ E +L ++ LE
Sbjct: 575 EIEEENKRKQERELKKIREKEKKRDKKK---QLKLAKEEERQRREAERLAEQAAQKALEA 631
Query: 617 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKE 796
+++ + + ++ + +K QEL + + ++ + E++ K+Q + K
Sbjct: 632 KRQEEARKKREEQRLKR----EQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKM 687
Query: 797 RQKQHLRHKALKKGLD 844
++Q LR + K+ L+
Sbjct: 688 AREQRLREEEEKRILE 703
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 35.1 bits (77), Expect = 0.013
Identities = 35/138 (25%), Positives = 66/138 (47%), Gaps = 4/138 (2%)
Frame = +2
Query: 437 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLE-RNKTKEQLE 613
+ EEK +R E + KR+A +A ++A + ++K++ A+ E K K + E
Sbjct: 572 EAEEKAKREAEEKAKREAEEKAKREAEENAKR-EAEEKAKREAEEKAKREAEEKAKREAE 630
Query: 614 EEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKRQDYDLK 784
E+ K + K E + + +KA+ E K E E K + EE KR+ +
Sbjct: 631 EKAKREAEEKAK-REAEEKAKREAEEKAKREAEENAKREAEEKAKREAEENAKREAEE-- 687
Query: 785 ELKERQKQHLRHKALKKG 838
++K +++ + KA ++G
Sbjct: 688 KVKRETEENAKRKAEEEG 705
Score = 31.5 bits (68), Expect = 0.16
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 7/137 (5%)
Frame = +2
Query: 446 EKRQRLEEAEK-KRQAMLQAMKDASKTGPNFTIQK-KSENFGLSNAQLERNKTKEQLEEE 619
E++ RLE E KR+A QA ++A + +K K E + + E N K + EE+
Sbjct: 550 EEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEEN-AKREAEEK 608
Query: 620 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETE---KYDLEERQKR--QDYDLK 784
K + K E + + +KA+ E K E E K + EE+ KR ++ +
Sbjct: 609 AKREAEEKAK-REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKR 667
Query: 785 ELKERQKQHLRHKALKK 835
E +E+ K+ A ++
Sbjct: 668 EAEEKAKREAEENAKRE 684
Score = 27.9 bits (59), Expect = 1.9
Identities = 24/106 (22%), Positives = 43/106 (40%)
Frame = +2
Query: 437 DIEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEE 616
+ EEK +R E KR+A +A ++A + +K + + + K + ++
Sbjct: 652 EAEEKAKREAEENAKREAEEKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADK 711
Query: 617 EKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEE 754
+I S PL +VD +Q E + K + EK E
Sbjct: 712 NPEIKSS---APLASSEANVDTSKQTNATEPEVVDKTKVEKLKASE 754
>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 630
Score = 34.7 bits (76), Expect = 0.017
Identities = 32/122 (26%), Positives = 59/122 (48%), Gaps = 2/122 (1%)
Frame = +2
Query: 449 KRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKE-QLEEEKK 625
++++LE K + LQ ++D KT + S + A LE + E ++EE K
Sbjct: 29 QKEKLEGDLKTQIKKLQRLRDQIKTWAS------SNDIKDKKALLENRRLIEAKMEEFKA 82
Query: 626 ISLSIRIKPLTIEGLSV-DKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQ 802
+ ++IK + EGLS+ KL K +E + I + +LE + + + + + LK
Sbjct: 83 VEREMKIKAFSKEGLSIASKLDPKEKEKQDTIQWISNAVEELERQAELIEAEAESLKATF 142
Query: 803 KQ 808
K+
Sbjct: 143 KR 144
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 33.9 bits (74), Expect = 0.030
Identities = 21/64 (32%), Positives = 34/64 (53%)
Frame = +2
Query: 443 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 622
EEKR+++EE++K + +LQA + K N + KKS + + KE+ + EK
Sbjct: 138 EEKRRKIEESDKWHRVLLQA--EGKKLKDNEQLLKKSIRRKEKEKKKSSDAWKERKDNEK 195
Query: 623 KISL 634
K L
Sbjct: 196 KAML 199
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 32.7 bits (71), Expect = 0.068
Identities = 22/90 (24%), Positives = 48/90 (53%), Gaps = 1/90 (1%)
Frame = +2
Query: 578 QLERNKTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEER 757
+L+R K ++Q E+EKK+ +I ++ L +KL ++ L E + E L E+
Sbjct: 97 RLKREKERQQREQEKKLREQEKIAAKKMKEL--EKLEKERIRLQEQQRRKEERDQKLREK 154
Query: 758 QKRQDYDLKELKERQKQHLR-HKALKKGLD 844
++ Q +++ +++Q L+ + KG++
Sbjct: 155 EEAQRLRQEQILNKERQQLKLNNFFTKGVE 184
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 31.1 bits (67), Expect = 0.21
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = +1
Query: 700 GTLGVHRQTRDREIRSRREAKETGLRLKRAQRKTKAAPEAQSSQE 834
GTLG +Q +RE +S R+ K L K A+R+ + E + ++
Sbjct: 82 GTLGKFQQESEREQKSARKVKRAELEEKLAKRREQELQELEKQEK 126
>SPBC365.07c |||TATA element modulatory factor homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 547
Score = 30.3 bits (65), Expect = 0.36
Identities = 28/136 (20%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 619
+ E +L+ ++K+ + D+ + +QK +S + E+ + ++EE
Sbjct: 73 LSEAETKLKRLDEKQATPELQVSDSKEMEEQLELQKSQFEKRISILEKEKEDLQRKMEEL 132
Query: 620 KKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKEL-KE 796
S+ + +E LS Q++Q + E K + E DL+E ++ ++ K +E
Sbjct: 133 TVESMEVVRLTRQVETLSTQYSIQRSQWVRE-DEKKKKEIQDLKELYEKSEHGAKNWERE 191
Query: 797 RQKQHLRHKALKKGLD 844
R+ + + K LD
Sbjct: 192 RETFQNQVSQMSKQLD 207
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 30.3 bits (65), Expect = 0.36
Identities = 21/78 (26%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
Frame = +2
Query: 437 DIEEKRQRLEEAEKKRQAMLQAMKD----ASKTGPNFTIQKKSENFGLSNAQLERNKTKE 604
++EEK LE A+ Q ++ ++KD +K + ++ G+S+A L + K K
Sbjct: 162 ELEEKINSLESAQSIEQEVISSLKDDKTVETKNDVPEVSRPSTDTIGVSSA-LSKKKKKR 220
Query: 605 QLEEEKKISLSIRIKPLT 658
+ +KK S I+ T
Sbjct: 221 NRKNQKKKSTKQNIEATT 238
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 29.9 bits (64), Expect = 0.48
Identities = 19/72 (26%), Positives = 42/72 (58%)
Frame = +2
Query: 593 KTKEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQD 772
KT E+LE+E + ++S +++ L G D +A +L + + YD E++QK ++
Sbjct: 168 KTAEELEKEDREAMSAKLQELIRRGTPADLA--EANKLMKVMAG-----YDTEQKQKYKE 220
Query: 773 YDLKELKERQKQ 808
+ L +L++ +++
Sbjct: 221 HVLVDLEKVKRK 232
>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1190
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/52 (34%), Positives = 32/52 (61%)
Frame = +2
Query: 689 QKAQELWECIVKLETEKYDLEERQKRQDYDLKELKERQKQHLRHKALKKGLD 844
++AQE++ ++ L E D+E+ Q Q + L+E +++ LRH L+K LD
Sbjct: 906 KRAQEMYANVL-LGVE--DMEDDQFSQRCERMALREAERRKLRHGKLQKHLD 954
>SPAC22G7.05 |||krr family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 28.3 bits (60), Expect = 1.5
Identities = 17/54 (31%), Positives = 31/54 (57%)
Frame = +2
Query: 461 LEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEEK 622
+EE E+ R+ + A D + G + +S+ G + +++ KTK+QLEEE+
Sbjct: 197 VEEQERLRKETIAAFHDVN--GNKDAVSNESDEDG--DFLVKKEKTKKQLEEEE 246
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 27.9 bits (59), Expect = 1.9
Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = +2
Query: 554 ENFGLSNAQLERNKT-KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLE 730
EN L + L+R K E+L + + + + + +T E L QKA E E I KLE
Sbjct: 366 ENTSLESQLLKREKQLSEELAKLRSTNAQLTDR-ITQESKKASFLEQKASEQEEVIRKLE 424
Query: 731 TEKYDLE 751
+ D++
Sbjct: 425 KDLADVD 431
>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 218
Score = 27.9 bits (59), Expect = 1.9
Identities = 25/99 (25%), Positives = 46/99 (46%), Gaps = 6/99 (6%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 619
+ EK+ + K A ++A + ASK+G T S+N L + +R + K E
Sbjct: 116 LHEKKVIDDNQYKDAMATVEAHEQASKSGDTSTSGAISKNDILKRIEEDRERHKRMRENI 175
Query: 620 KKIS---LSIRIKPLTIEGLS---VDKLRQKAQELWECI 718
IS L I T +G++ ++ L+ + ++ EC+
Sbjct: 176 WAISEPELEAEIAWNTTQGITESDLESLKDEYEKFNECL 214
>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
orphan|Schizosaccharomyces pombe|chr 1|||Manual
Length = 776
Score = 27.5 bits (58), Expect = 2.6
Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 3/60 (5%)
Frame = +2
Query: 449 KRQRLEEAEKKRQAMLQAMKDAS---KTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 619
K + +++R A +QA+ D S +T + + +SEN GL N ++ +QLE+E
Sbjct: 232 KDHEILRLKEERTAAMQAIDDISGTIETIKSDCYKVESENKGLINEVMDMRNFVQQLEQE 291
>SPAC1834.07 |klp3|krp1|kinesin-like protein
Klp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 554
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/49 (28%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 527 PNFTIQKKSENFGLSNAQLERNKTKEQLEE-EKKISLSIRIKPLTIEGL 670
P FTI++K +NF ++N ERN ++L + ++ + ++ I+ L
Sbjct: 490 PGFTIEQKDKNFSINN---ERNNFLQKLSTLDSSLAALVNVQRKLIKAL 535
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +2
Query: 701 ELWEC-IVKLETEKYDLEERQKRQDYDL--KELKERQKQHLRHKALK 832
E W +V E+Y++E + +++Y+ K LKE HL K K
Sbjct: 69 ERWRTFLVNRAQEEYEVEMKAAKEEYEYRCKTLKEMVLSHLNEKKRK 115
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 26.6 bits (56), Expect = 4.5
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -3
Query: 289 PLFAPFVDVFLQLFIQVRPLLVLTLDEFWISLTLLFRSG 173
P+FA + L LF+Q+ P + + FW S+ L+ +G
Sbjct: 796 PIFAYVISKCLNLFMQIDPSIGVA---FWSSMVLVVAAG 831
>SPBC1A4.09 |||pseudouridine synthase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 680
Score = 26.2 bits (55), Expect = 5.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 679 QTPTEGPGTLGVHRQTRDREIRSRREAK 762
++ T+G GT V + TR + RSRR+ +
Sbjct: 203 ESSTKGNGTFTVSKTTRKNQPRSRRDPR 230
>SPBC649.03 |rhp14||XP-A family homolog Rhp14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 289
Score = 26.2 bits (55), Expect = 5.9
Identities = 32/100 (32%), Positives = 49/100 (49%), Gaps = 16/100 (16%)
Frame = +2
Query: 599 KEQLEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWEC--------IVKLETEK--YDL 748
+EQ E +K+ I+ + ++G V+K ++ E E K+E K Y L
Sbjct: 15 EEQRNEIEKLKNLTGIEEVHVDGAKVNKRKRTFDEQSEITKDYIEYDFSKIEDTKGGYLL 74
Query: 749 EE------RQKRQDYDLKELKERQKQHLRHKALKKGLDPE 850
EE R+K + +L+E +ERQK+ LR L LDPE
Sbjct: 75 EEKKVEDLREKPAERELREQEERQKK-LRLAPL--NLDPE 111
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.2 bits (55), Expect = 5.9
Identities = 17/41 (41%), Positives = 19/41 (46%)
Frame = -2
Query: 713 TPRVPGPSVGVCRRRDPRWSAA*CGWTGRSSSPLPAAPWSC 591
TP VP S P S + TG SSSPLP+ SC
Sbjct: 302 TPTVPPTSTSSTSTPPPPASTS---STGTSSSPLPSTSTSC 339
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 26.2 bits (55), Expect = 5.9
Identities = 19/74 (25%), Positives = 38/74 (51%), Gaps = 2/74 (2%)
Frame = +2
Query: 608 LEEEKKISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYDLEERQKRQDYDLKE 787
+EE +I +S+ +KPL I K A + V E + Y+ ++Q++++ + K+
Sbjct: 13 IEETNRIRISLGLKPLDISEEKPQKELSDA-SVKSSYVDQEQQAYENWKKQEQEEINRKK 71
Query: 788 LKERQK--QHLRHK 823
+E + + LR K
Sbjct: 72 EEELKSKFEKLRQK 85
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/82 (19%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Frame = +2
Query: 581 LERNKTKEQLEEEK----KISLSIRIKPLTIEGLSVDKLRQKAQELWECIVKLETEKYD- 745
++ ++K+Q+++ + K ++ P ++ D + + E + ++E EK +
Sbjct: 113 MQERQSKKQIQDRESDYQKQRYDRQLTPTRVDAFQPDGTQSNGRSYAEVMRQVELEKEER 172
Query: 746 ---LEERQKRQDYDLKELKERQ 802
+E Q+R++ LKE++E +
Sbjct: 173 RVHMELNQRRREGTLKEVEEEE 194
>SPAC22F3.11c |snu23||U4/U6 x U5 tri-snRNP complex subunit
Snu23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 151
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/69 (21%), Positives = 36/69 (52%)
Frame = +2
Query: 440 IEEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTKEQLEEE 619
I EKR LEE +++ + + + + K ++++++ E + + +LE K + + ++
Sbjct: 65 IIEKRATLEEVKERMEYWRRQLLEPEKGSEEYSLKERVERY---HQELEAKKLRRKQKKV 121
Query: 620 KKISLSIRI 646
K S R+
Sbjct: 122 NKEKNSPRL 130
>SPBC2A9.07c |||zf-PARP-type zinc finger protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 274
Score = 25.8 bits (54), Expect = 7.8
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Frame = +2
Query: 443 EEKRQRLEEAEKKRQAMLQAMKDASKTGPNFTIQKKSENFGLSNAQLERNKTK--EQLEE 616
EEK +++EE E + + ++D K+ +++K S A+ +R+ + E LE+
Sbjct: 132 EEKDRKIEEGELTSEEEKEPIQDLRKSHKRKSVEKSSVPNKKHKAERKRSPSPKIEILED 191
Query: 617 EKKI 628
+++I
Sbjct: 192 DEEI 195
>SPBP35G2.13c |swc2||chromatin remodeling complex subunit Swc2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 316
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/91 (21%), Positives = 46/91 (50%), Gaps = 1/91 (1%)
Frame = +2
Query: 539 IQKKSENFGLSNAQLERNKTKEQLEEEKKISLSIRI-KPLTIEGLSVDKLRQKAQELWEC 715
++K+ NA++E+ + +EEE++ I I + E + KL ++ +E+ E
Sbjct: 25 LEKEHLRMTQQNAEIEKEDEEYNIEEEEEAERDIEISSESSDEEAELKKLEEEGEEV-EK 83
Query: 716 IVKLETEKYDLEERQKRQDYDLKELKERQKQ 808
I++ + E+ + QK + +L+ + K+
Sbjct: 84 ILR-DEERIKKRKIQKNRAANLQRTLQPPKR 113
>SPAC869.02c |||nitric oxide dioxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 25.8 bits (54), Expect = 7.8
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +2
Query: 767 QDYDLKELKERQKQHLR 817
+ Y++KEL E QKQ++R
Sbjct: 24 EGYEIKELNESQKQYIR 40
>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 104 CWLFIECRTGRSRSLSHSALVLGPAAQRRWNVES 3
CW I G S L+ AL+L PA+ NV S
Sbjct: 292 CWWIIPMALGSSAGLACRALLLNPASVTYPNVLS 325
>SPAC23C11.15 |pst2||Clr6 histone deacetylase complex subunit
Pst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1075
Score = 25.8 bits (54), Expect = 7.8
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 710 ECIVKLETEKYDLEERQKRQDYDLKELKERQKQ 808
E + KLE E+Y+ + + + +K LK+ Q +
Sbjct: 391 EAMTKLEEERYEFDRHIEATSWTIKSLKKIQNR 423
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,410,167
Number of Sequences: 5004
Number of extensions: 36357
Number of successful extensions: 244
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -