Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30088
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   3.4  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   4.5  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   7.8  
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar...    26   7.8  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +1

Query: 217 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 333
           +  +  +LT+ PN    L+T+H    S Y Y LK+    DS+N
Sbjct: 33  FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 241 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 369
           T+   +++ L+T  S   YVLK + +   +NV  V  Q E +N
Sbjct: 50  TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +3

Query: 99  EATTGAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 224
           +A+  A   YP+   P    A  R +LRD  A P+    LR+
Sbjct: 530 KASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571


>SPAC23D3.07 |pup1||20S proteasome component beta
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 267

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 786 KRLDSFLENSWSAGGISAARMHTTVLCISTTTESYSLY 673
           K+L     N W AG  +AA        IS+  E +SLY
Sbjct: 67  KKLHLISPNIWCAGAGTAADTEFVTSMISSNIELHSLY 104


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,375,238
Number of Sequences: 5004
Number of extensions: 70975
Number of successful extensions: 232
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)