Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30088
         (854 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1464 + 26726527-26727552                                         30   2.0  
04_04_0333 - 24481029-24481109,24481185-24481253,24481785-244818...    30   2.0  
08_02_0098 - 12324664-12324822,12325430-12325543,12325649-123259...    29   4.7  
08_02_0835 + 21636358-21636673,21637182-21637729                       29   6.2  
02_04_0036 + 19097693-19098106                                         29   6.2  
11_01_0471 - 3648871-3649078,3649841-3649926,3650111-3650155,365...    28   8.3  
01_01_1236 - 10020837-10021041,10021746-10021831,10022552-100230...    28   8.3  

>07_03_1464 + 26726527-26727552
          Length = 341

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 22/52 (42%), Positives = 28/52 (53%)
 Frame = +1

Query: 436 IEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLGEFVANLDNKLQADEHK 591
           +E L GK  AVR++EY PG +   C   E  L   GEFV  +  KL   EH+
Sbjct: 290 VEALRGKGKAVRVVEY-PGAIHGFCLFPE--LADSGEFVEEM--KLFVQEHR 336


>04_04_0333 -
           24481029-24481109,24481185-24481253,24481785-24481853,
           24481923-24481944,24482302-24482393,24482688-24482803,
           24482899-24483042,24483287-24483476
          Length = 260

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = +1

Query: 115 PGQVIRPIIDHEQVKLLAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNHSP 288
           PG +   +++   VK+   RL  +SVLD   L+   YD  + K  E   + +PL  N +P
Sbjct: 111 PGMLDHIMVETTGVKVALNRLAVVSVLDAHTLSVMPYDPSSMKSIEHAIISSPLGINPTP 170

Query: 289 YG 294
            G
Sbjct: 171 DG 172


>08_02_0098 -
           12324664-12324822,12325430-12325543,12325649-12325921,
           12326124-12326354,12326444-12326594,12326680-12326759,
           12326839-12326913,12326992-12327093,12328000-12328121,
           12329726-12329791,12330158-12330201,12330850-12330898,
           12330967-12331087,12334631-12334735
          Length = 563

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
 Frame = +1

Query: 181 GISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQ-- 354
           G+  L+ T  NG  +K Y    +P +  P++T  S     + I++S  S     +E Q  
Sbjct: 92  GLCQLEFT--NGQVEKRYLSRTEPKLPVPIVTCESALWRGVSILDSDSSGITMELELQWD 149

Query: 355 ---NEIMNFLATRSVTCPKPVRNI 417
              N +++   T  ++ P  V+NI
Sbjct: 150 GNPNIVLDIQTTLGISLPVQVKNI 173


>08_02_0835 + 21636358-21636673,21637182-21637729
          Length = 287

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 28/79 (35%), Positives = 40/79 (50%)
 Frame = -1

Query: 623 GRR*PLTIRWALCSSACNLLSRLATNSPS*YRRASDRGQFFKSSPGTYSSSLTACFLPPR 444
           GRR  LT+R+ + S A   ++R    SPS + +  +R     SS    SS+L  C LP  
Sbjct: 123 GRRPKLTVRFHVFS-ARGFVARHV--SPSKFWKPPERATLIPSSFLVSSSALPDCHLPRF 179

Query: 443 SSIECR*PKIFRTGLGQVT 387
            S+     +I +T LGQ T
Sbjct: 180 PSLAVASTQIRKT-LGQRT 197


>02_04_0036 + 19097693-19098106
          Length = 137

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +1

Query: 400 KPVRNIFG--HLHSIEDLGGKKHAVRLLEYVPGELLKNCPLSEALLYQLG 543
           +PV  +F   H HS+   GG++ A RL+ +  G   +     +A   QLG
Sbjct: 68  RPVEGLFRYCHRHSVSAAGGERRAFRLVRFA-GAASEEIRRGDATFQQLG 116


>11_01_0471 -
           3648871-3649078,3649841-3649926,3650111-3650155,
           3650306-3650815,3651700-3653757
          Length = 968

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 503 RTVPCPKLSCISSENLSLIWITNCRQT 583
           R V C +L C + +++  +W+ +CRQ+
Sbjct: 620 RIVLCVRLLCNTGDDVRKVWLQSCRQS 646


>01_01_1236 -
           10020837-10021041,10021746-10021831,10022552-10023061,
           10023914-10025965
          Length = 950

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +2

Query: 503 RTVPCPKLSCISSENLSLIWITNCRQT 583
           R V C +L C + +++  +W+ +CRQ+
Sbjct: 618 RIVLCVRLLCNTGDDVRKVWLQSCRQS 644


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,257,406
Number of Sequences: 37544
Number of extensions: 534433
Number of successful extensions: 1738
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1668
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)