Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30088
         (854 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    26   0.38 
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    26   0.38 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    24   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   3.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   6.3  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.3  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 151 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 282
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 236 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 284


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 26.2 bits (55), Expect = 0.38
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +1

Query: 151 QVKL---LAERLYGISVLDLTELN--GYDDKNYKLTEDPNMKNPLITNH 282
           Q+KL   L E   G   ++L   N  G+DD    LT D N +NP  + +
Sbjct: 326 QIKLVEGLEEEAEGAITVELQSENIPGFDDYMASLTPDTNRRNPWFSEY 374


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 123 GYPSDNRPRAGEAT 164
           GYP D +PRAG  T
Sbjct: 642 GYPFDRQPRAGVET 655


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 594 PPDGEWLPSPMDFSNARG 647
           PPD  W P  + F+NA G
Sbjct: 104 PPDKVWKPDIVLFNNADG 121


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 745 WHLCRPHAYHSSVY 704
           WH+ +P  YH  +Y
Sbjct: 43  WHVDQPTVYHPELY 56


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/64 (18%), Positives = 29/64 (45%)
 Frame = -3

Query: 585 LVCLQFVIQISDKFSELIQESFGQGTVLQELSRHVLQQSYGVFLASQVLDRVQVTEDIPY 406
           L+C   ++ +SD   +L   S     +L      +    + + L + +    +++ ++PY
Sbjct: 291 LIC--HILCMSDLHWQLPHNSTNPPNILLYYRDSLALSVFALILTALLRKMQEMSIEVPY 348

Query: 405 WLGT 394
           W+ T
Sbjct: 349 WIST 352


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = -2

Query: 745 WHLCRPHAYHSSVY 704
           WH+ +P  YH  +Y
Sbjct: 43  WHVDQPTVYHPELY 56


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,035
Number of Sequences: 438
Number of extensions: 5470
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)