Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30088
         (854 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g31480.1 68417.m04472 coatomer beta subunit, putative / beta-...    31   1.3  
At4g11200.1 68417.m01813 hypothetical protein contains weak hit ...    31   1.3  
At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp...    31   1.3  
At4g03470.1 68417.m00474 ankyrin repeat family protein contains ...    30   2.3  
At3g29810.1 68416.m03794 phytochelatin synthetase family protein...    29   3.0  
At4g24450.1 68417.m03505 starch excess protein-related similar t...    29   3.9  
At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related conta...    28   6.9  
At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00...    28   9.1  
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-...    28   9.1  
At3g51280.1 68416.m05613 male sterility MS5, putative similar to...    28   9.1  

>At4g31480.1 68417.m04472 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 971

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 503 RTVPCPKLSCISSENLSLIWITNCRQTSIR 592
           R V C KL C  ++ +  IW+ +CRQ+ ++
Sbjct: 639 RIVLCIKLLCHRNDEMKKIWLESCRQSFVK 668


>At4g11200.1 68417.m01813 hypothetical protein contains weak hit to
           Pfam profile PF03108: MuDR family transposase
          Length = 462

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
 Frame = +1

Query: 91  TDAKLLLEPGQVIRP-IIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTED 249
           +DA+L   P   +   I+D E V + AE +    + +  E   Y+D+ Y  T+D
Sbjct: 269 SDARLSESPDSELEAEIVDEEDVNVKAEEIQVFDIRNYEEQIPYEDEEYPTTDD 322


>At1g14650.1 68414.m01741 SWAP (Suppressor-of-White-APricot)/surp
           domain-containing protein / ubiquitin family protein
           similar to SP|Q15459 Splicing factor 3 subunit 1
           (Spliceosome associated protein 114) {Homo sapiens};
           contains Pfam profiles PF00240: Ubiquitin family,
           PF01805: Surp module
          Length = 785

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 14/54 (25%), Positives = 29/54 (53%)
 Frame = +1

Query: 106 LLEPGQVIRPIIDHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNP 267
           ++EPG+ +   +D E+VKL+AE +   ++ +  ++    D+   +    N K P
Sbjct: 345 IVEPGKEVEMEMDEEEVKLVAEGMRAANLEENVKIENVHDEEAPMRIVKNWKRP 398


>At4g03470.1 68417.m00474 ankyrin repeat family protein contains
           ankyrin repeats, Pfam domain PF00023
          Length = 683

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 618 SPMDFSNARGRAKPLPTKDTENMIP 692
           S   F   RG+A PLP KDTE  +P
Sbjct: 42  SSRGFLRNRGKAIPLPMKDTEKTVP 66


>At3g29810.1 68416.m03794 phytochelatin synthetase family protein /
           COBRA cell expansion protein COBL2 similar to
           phytochelatin synthetase [Hordeum vulgare subsp.
           vulgare] GI:29570314; identified in Roudier, et al,
           Plant Phys. (2002) 130:538-548 (PMID:12376623); contains
           Pfam profile PF04833: Phytochelatin synthetase-like
           conserved region
          Length = 441

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 419 SVTCTLSRTWEARNTP*DCWSTCRESS*RTVPCPKLSC 532
           ++TCT S+ + AR TP  C S     +   VPCP  SC
Sbjct: 209 NITCTYSQ-FLARKTPTCCVSLSAFYNETIVPCPTCSC 245


>At4g24450.1 68417.m03505 starch excess protein-related similar to
           SEX1 [Arabidopsis thaliana] GI:12044358
          Length = 1284

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 11/30 (36%), Positives = 21/30 (70%)
 Frame = +2

Query: 620 AHGLQQRQGQSQAAAYQRYREYDSVVVEIH 709
           AH +  R+G+ Q++A ++  +YD+ V E+H
Sbjct: 139 AHKIWDRKGRPQSSAREQQIDYDNAVRELH 168


>At4g04885.1 68417.m00711 pre-mRNA cleavage complex-related contains
           weak similarity to Pre-mRNA cleavage complex II protein
           Pcf11 (Fragment) (Swiss-Prot:O94913) [Homo sapiens]
          Length = 808

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 313 NSIDSQNVGVVEAQNEIM-NFLATRSVTCPKPVRNIFGHL-HSIEDLGGKKHAVRLLEYV 486
           N +   ++  +  QN+++ N+L + S   P+P++++  H+ H     G        L   
Sbjct: 516 NQVSQSHLNDMTQQNQMLVNYLPSSSAMAPRPMQSLLTHVSHGYPPHGSTIRP--SLSIQ 573

Query: 487 PGELLKNCPLSEALLYQLG 543
            GE +   PLS  +L Q+G
Sbjct: 574 GGEAMH--PLSSGVLSQIG 590


>At5g54820.1 68418.m06828 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 472

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 1   QTSVHTQECNGTLVLIENC 57
           +T +HT+E NG ++L+ NC
Sbjct: 335 RTKMHTKEFNGIILLLNNC 353


>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
           beta-coat protein, putative / beta-COP, putative similar
           to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
           from {Rattus norvegicus} SP|P23514, {Mus musculus}
           SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 948

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +2

Query: 503 RTVPCPKLSCISSENLSLIWITNCRQTSIR 592
           R + C KL C  +  +  IW+ +CRQ+ ++
Sbjct: 616 RIMLCIKLLCHRNVEMKKIWLESCRQSFVK 645


>At3g51280.1 68416.m05613 male sterility MS5, putative similar to
           male sterility MS5 [Arabidopsis thaliana] GI:3859112;
           contains Pfam profile PF00515 TPR Domain
          Length = 430

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 199 LTELNGYDDKNYKLTEDPNMKNPLITNHSPY 291
           L+  +GY D+N K++ +P + NPL  +  P+
Sbjct: 304 LSNGDGYGDENVKMSVNPVVVNPLRVDAKPF 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,970,432
Number of Sequences: 28952
Number of extensions: 391927
Number of successful extensions: 1266
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1266
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)