Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30086X
         (557 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    26   3.3  
SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase Ubp8|Schizos...    26   4.3  
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.5  
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po...    25   7.5  
SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|ch...    25   10.0 

>SPBC17D11.05 |tif32||translation initiation factor
           eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 329 QQLMYKKLRFQRKICPVRFYVL*RNL*KSSGAR-SNLGGKVPKPSA 463
           Q+ M +KL  QR+I   R   + R L + + AR +N+G   P P A
Sbjct: 835 QREMAEKLERQRRIQQERDEEISRKLAEKAAARRANIGASSPSPGA 880


>SPAC13A11.04c |ubp8||ubiquitin C-terminal hydrolase
           Ubp8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 449

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +3

Query: 246 SLKCIYFCLAYKKKRIAYLVFYSFSLIIN----S*CIKSYVFNEK 368
           SLK +  CL  KK+R+A       SL IN      C++ +V  EK
Sbjct: 268 SLKNVVTCLDCKKERVAVDPLMDISLDINEPTLQGCLERFVSKEK 312


>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 240

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 171 TYSTVINNINKYQQRYKIAFRKNIRSLK 254
           +YS  + N+  Y QR ++A   N+  LK
Sbjct: 172 SYSPALKNVLNYSQRERVANLANVSILK 199


>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 670

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 310 TVFRSSSTANV*KVTFSTKNLSS 378
           T + SS+T N+ ++ FST+ LSS
Sbjct: 132 TFYTSSTTENLDELNFSTEELSS 154


>SPAC1A6.06c |meu31||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 185

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = -3

Query: 315 NCKILNMQFFFFCKPNKNIYTLGI*CFYERLFCNVVDI 202
           +C +   +FFF      N+Y++   C    +F N++ I
Sbjct: 115 SCSLNTQKFFFIIVAASNVYSIFQLCGCLLMFNNIISI 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,010,249
Number of Sequences: 5004
Number of extensions: 39592
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)