Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30086X
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0925 - 12440917-12441560,12441675-12441810                       31   0.62 
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726...    29   1.9  
02_05_0482 + 29382696-29383251,29383376-29383692                       29   1.9  
01_01_0017 + 133311-133615,133698-133824,133912-134253                 29   2.5  
11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053     28   4.4  
06_01_0900 + 6926600-6927202                                           28   4.4  
05_01_0188 - 1357074-1357098,1357811-1357941,1358572-1358667,135...    28   5.8  
08_01_0875 - 8584345-8584556,8584653-8584752,8584837-8584939,858...    27   7.7  

>03_02_0925 - 12440917-12441560,12441675-12441810
          Length = 259

 Score = 31.1 bits (67), Expect = 0.62
 Identities = 17/56 (30%), Positives = 26/56 (46%)
 Frame = -1

Query: 242 NVFTKGYFVTLLIFIYIIYYRGVCIESASECVGCTCAREHRRDTPPTSAPHTRTCT 75
           N++++GY  +       ++ RG+   S   C    CA +HRR   P  A  T T T
Sbjct: 53  NLYSQGYGTSTAALSTALFNRGL---SCGSCYELRCAGDHRRSCLPGGATVTVTAT 105


>06_01_0944 +
           7264833-7265120,7265511-7265600,7265702-7265798,
           7265927-7265988,7266508-7266596,7266702-7266822,
           7266915-7267058,7267492-7267820,7268154-7268394,
           7269042-7269245,7271150-7271619,7272703-7272746,
           7273121-7273211,7273494-7273596,7273682-7273783,
           7274214-7274300,7274421-7274531
          Length = 890

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 451 GHLPT*VRPGARRFLKVPLQNIKTDWTDFSLK 356
           G LPT +RP  RR   + L+N   +W +F  +
Sbjct: 525 GDLPT-IRPNKRRLASILLKNATMEWNEFETR 555


>02_05_0482 + 29382696-29383251,29383376-29383692
          Length = 290

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 422 ARSNLGGKVPKPSARAGRERWGAG 493
           +R  LG K P P  R G+ER G G
Sbjct: 39  SRKRLGAKPPSPQRRGGQEREGGG 62


>01_01_0017 + 133311-133615,133698-133824,133912-134253
          Length = 257

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 164 SASECVGCTCAREHRRDTPPTSAPHTRT 81
           S+S      C +   R+ PP  APHT T
Sbjct: 6   SSSTASAAACCKSRSRNPPPAPAPHTST 33


>11_04_0130 + 13790349-13790431,13790590-13790704,13790832-13791053
          Length = 139

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 436 RWE--GAQAVSKGGARALGRRADSSRCR 513
           RW   GA A+  GG++ +G  A+ SRC+
Sbjct: 10  RWSLAGATALVTGGSKGIGNEAELSRCQ 37


>06_01_0900 + 6926600-6927202
          Length = 200

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 95  VRRWGACLGGARARTCIRRTRSHSRYILHG 184
           VR W   + G R +T IRR R   R+  HG
Sbjct: 76  VREWSELVAGPRWKTFIRRFRRSPRHHHHG 105


>05_01_0188 -
           1357074-1357098,1357811-1357941,1358572-1358667,
           1358736-1358769,1358867-1358958,1359273-1359332,
           1359376-1359435,1360016-1360525,1360645-1360719,
           1360809-1361015
          Length = 429

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 17/55 (30%), Positives = 26/55 (47%)
 Frame = +3

Query: 171 TYSTVINNINKYQQRYKIAFRKNIRSLKCIYFCLAYKKKRIAYLVFYSFSLIINS 335
           T  TV++  N Y   +      N+     I F   +K KR+AYL  Y  + +IN+
Sbjct: 35  TTKTVLDPWNPYFPLWPPEIPPNLGLNGAICFIEDWKMKRMAYLASYRSTCVINA 89


>08_01_0875 -
           8584345-8584556,8584653-8584752,8584837-8584939,
           8585505-8585645,8585756-8585916,8585997-8586053,
           8586401-8586475,8587747-8587986
          Length = 362

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = -2

Query: 553 AGHQQVPRQGTRGFCSERSQPGAPALAPRP 464
           +G ++V  +GTRGF +E S P +PA  P P
Sbjct: 39  SGIEKVLLRGTRGFSAEVSDPFSPA-NPNP 67


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,418,875
Number of Sequences: 37544
Number of extensions: 271695
Number of successful extensions: 890
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 861
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 890
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)