Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30086X
         (557 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)               32   0.28 
SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)                   31   0.84 
SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)                      29   3.4  
SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)           28   4.5  
SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.5  
SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)                    28   5.9  
SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)         28   5.9  
SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)                      28   5.9  
SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)                   27   7.9  

>SB_7745| Best HMM Match : Lectin_C (HMM E-Value=4.2e-05)
          Length = 322

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 264 NIYTLGI*CFYERLFCNVVDIYLYYLLPWSMYRECERVRRMH 139
           N YT+ I C+Y  + C V  +YL++ L   + +ECE     H
Sbjct: 158 NTYTILILCYYPAILCIVKPVYLFFGL--GVDKECESCYSFH 197


>SB_8335| Best HMM Match : Dehydrin (HMM E-Value=7.2)
          Length = 531

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +1

Query: 418 GRQVEPRWEGAQAVSKGGARALGRRADSS 504
           G Q +P+WE  +A   G A ++GR ++SS
Sbjct: 432 GNQWDPKWERNRAAVNGNADSMGRHSNSS 460


>SB_33587| Best HMM Match : SAMP (HMM E-Value=2.7)
          Length = 488

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 165 ECERVRRMHVRARAPPRHAPHLR 97
           +CE V R H+  R+PP + P L+
Sbjct: 423 QCESVARKHMPRRSPPAYKPQLK 445


>SB_11573| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 405

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 180 WSMYRECERVRRMHVRARAPPRHAP 106
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 146 WSMFNECFPLIRVKVSSRDPPYMSP 170


>SB_41396| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.92)
          Length = 806

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = -1

Query: 149 VGCTCAREHRRDTPPTSAPHTRTCTPRTLHLTS 51
           V  + + ++RR +P + +PH+ T TP    +TS
Sbjct: 653 VSSSASSKNRRSSPVSRSPHSTTGTPNATGITS 685


>SB_16310| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 180 WSMYRECERVRRMHVRARAPPRHAP 106
           WSM+ EC  + R+ V +R PP  +P
Sbjct: 12  WSMFNECFPLIRVKVSSRDPPYMSP 36


>SB_50285| Best HMM Match : SAP (HMM E-Value=0.0036)
          Length = 1136

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 180 TVINNINKYQQRYKIAFRKNIRSLKCI 260
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_5179| Best HMM Match : Neur_chan_memb (HMM E-Value=3.5e-08)
          Length = 428

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
 Frame = -1

Query: 287 FFFVSQTKIYTL*GSNVFTKGY-FVTLLI--FIY-IIYYRGVCIESASECVGCTCAREHR 120
           FF  + T I T    +V  +GY ++ L +   +Y ++YY G    S +E +       HR
Sbjct: 355 FFICAITMIVTY---SVLLRGYKYMELSLDKLVYNLVYYFGATKYSVTEIMKIVLCSIHR 411

Query: 119 RDTPPTSAPHTRTCTPR 69
           R+   +   H  +C PR
Sbjct: 412 RNVYVSLYIHLLSCAPR 428


>SB_484| Best HMM Match : bZIP_1 (HMM E-Value=1.4)
          Length = 263

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 180 TVINNINKYQQRYKIAFRKNIRSLKCI 260
           T++ + N+Y Q Y+  F     SLKCI
Sbjct: 179 TMVTSENEYVQEYRARFEIKTNSLKCI 205


>SB_48760| Best HMM Match : bZIP_1 (HMM E-Value=0.95)
          Length = 221

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 183 VINNINKYQQRYKIAFRKNIRSLKCI 260
           ++ + N+Y+Q Y+  F     SLKCI
Sbjct: 1   MVTSENEYEQEYRARFEIKTNSLKCI 26


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,453,128
Number of Sequences: 59808
Number of extensions: 312798
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)