Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30086X
         (557 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138...    31   0.52 
At1g20550.1 68414.m02561 expressed protein contains Pfam PF03138...    28   3.7  
At1g31490.1 68414.m03855 transferase family protein contains sim...    28   4.9  
At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2...    27   6.4  
At3g13480.1 68416.m01696 expressed protein ; expression supporte...    27   6.4  

>At1g76270.1 68414.m08856 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as '
           auxin-independent growth promoter -related' based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 572

 Score = 31.1 bits (67), Expect = 0.52
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -2

Query: 454 LGHLPT*VRPGARRFLKVPLQNIKTDWTDFSLK 356
           LGH PT VRP A++  ++ +    T W +FS K
Sbjct: 424 LGHKPT-VRPNAKKLYRLFMNKENTTWEEFSSK 455


>At1g20550.1 68414.m02561 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown; previously annotated as  'axi
           1 protein -related'  based on similarity to axi 1
           protein (GB:X80301) (GI:559920) from [Nicotiana
           tabacum], which, due to scienitific fraud was retracted.
           Retraction in: Schell J. EMBO J 1999 May 17;18(10):2908.
           PMID:10400497.
          Length = 526

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -2

Query: 451 GHLPT*VRPGARRFLKVPLQNIKTDWTDFSLKT*LF 344
           GH PT +RP A++  K+ +    T W +F+ +   F
Sbjct: 390 GHKPT-IRPNAKKLYKLFMSKENTTWEEFASRVRTF 424


>At1g31490.1 68414.m03855 transferase family protein contains
           similarity to anthranilate N-hydroxycinnamoyl
           benzoyltransferase GI:3288180, GI:2239091 from (Dianthus
           caryophyllus); contains Pfam profile PF02458 transferase
           family
          Length = 444

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = -3

Query: 150 RRMHVRARAPPRHAPHL 100
           RR  +RAR+PPR+ PHL
Sbjct: 186 RRNLLRARSPPRYDPHL 202


>At5g18580.1 68418.m02196 tonneau 2 (TON2) identical to tonneau 2
           protein (TON2) GI:11494362 from [Arabidopsis thaliana];
           contains Pfam profile: PF00036 EF hand
          Length = 480

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -3

Query: 312 CKILNMQFFFFCKPNK 265
           C+I + +FFFFC P++
Sbjct: 237 CRIASQKFFFFCDPHR 252


>At3g13480.1 68416.m01696 expressed protein ; expression supported
           by MPSS
          Length = 205

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -3

Query: 312 CKILNMQFFFFCKPNKNIYTLG 247
           CKI    F  FCKP+ +IY  G
Sbjct: 6   CKIQCPSFICFCKPSPHIYASG 27


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,543,017
Number of Sequences: 28952
Number of extensions: 208217
Number of successful extensions: 479
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 475
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)