Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30085X
         (441 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)              121   2e-28
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)             120   7e-28
SB_56| Best HMM Match : Actin (HMM E-Value=0)                         120   7e-28
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)             119   9e-28
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)              119   9e-28
SB_56628| Best HMM Match : Actin (HMM E-Value=0)                      119   9e-28
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)                105   1e-23
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)                 48   3e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   3e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)                  32   0.24 
SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)                  27   6.9  
SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)                        27   9.1  
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  
SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)          27   9.1  
SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)                   27   9.1  
SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)                27   9.1  
SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.1  

>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score =  121 bits (292), Expect = 2e-28
 Identities = 55/59 (93%), Positives = 58/59 (98%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           I+ALAPST+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 291 ISALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349


>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 376

 Score =  120 bits (288), Expect = 7e-28
 Identities = 54/59 (91%), Positives = 57/59 (96%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           IT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 318 ITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_56| Best HMM Match : Actin (HMM E-Value=0)
          Length = 375

 Score =  120 bits (288), Expect = 7e-28
 Identities = 54/59 (91%), Positives = 57/59 (96%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           IT+LAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 317 ITSLAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 338

 Score =  119 bits (287), Expect = 9e-28
 Identities = 54/59 (91%), Positives = 57/59 (96%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           I+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 280 ISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338


>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 375

 Score =  119 bits (287), Expect = 9e-28
 Identities = 54/59 (91%), Positives = 57/59 (96%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           I+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 317 ISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375


>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
          Length = 376

 Score =  119 bits (287), Expect = 9e-28
 Identities = 54/59 (91%), Positives = 57/59 (96%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           I+ALAP T+KIKIIAPPERKYSVWIGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 318 ISALAPPTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376


>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
          Length = 149

 Score =  105 bits (253), Expect = 1e-23
 Identities = 47/59 (79%), Positives = 53/59 (89%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           I  LA +++K+K+IAPPERKYSVWIGGSILASLSTFQQMWI+KEEY E GP IVHRKCF
Sbjct: 91  IAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIAKEEYHEYGPPIVHRKCF 149


>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
          Length = 543

 Score = 48.4 bits (110), Expect = 3e-06
 Identities = 21/56 (37%), Positives = 33/56 (58%)
 Frame = -3

Query: 430 LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 263
           + P  I+ ++I+   ++Y+VW GGS+LAS   F  +  +K +YDE GP I     F
Sbjct: 285 IKPKPIETQVISHHMQRYAVWFGGSMLASTPEFYSVCHTKADYDEHGPSICRHNPF 340


>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 411

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
 Frame = -3

Query: 412 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 290
           KI+I  PP RK+ V++GG++LA  +      W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399


>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
          Length = 240

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 14/36 (38%), Positives = 26/36 (72%), Gaps = 3/36 (8%)
 Frame = -3

Query: 439 ITALAPSTIKIKIIA---PPERKYSVWIGGSILASL 341
           + +  P ++++K+I+     E++++ WIGGSILASL
Sbjct: 195 LVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILASL 230


>SB_17462| Best HMM Match : DUF1168 (HMM E-Value=0.37)
          Length = 352

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 167 SGITRYNVLTVAFRTRTSTTPHSTGVT 247
           +GIT  N++T A  T TSTT  +  VT
Sbjct: 294 NGITNTNIITTATTTTTSTTISTITVT 320


>SB_46128| Best HMM Match : VQ (HMM E-Value=4.6)
          Length = 333

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 176 TRYNVLTVAFRTRTSTTPHSTGVT 247
           +RYN+ T +FR  T+TT  ST VT
Sbjct: 270 SRYNIETASFRHATTTT-QSTSVT 292


>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 245

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -3

Query: 409 IKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKEEYDE 296
           +K+  PP     + W+GG+I  SL        ++E Y +
Sbjct: 119 VKMHQPPVNANITAWLGGAIFGSLEVLADRSTTRERYQQ 157


>SB_12314| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 286

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 428 RALDHQDQDHRSPREEVLRMDRWI 357
           + LDH+ + H   ++E+ R+ +WI
Sbjct: 62  KELDHKSELHSKQKKEIKRLKKWI 85


>SB_46388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1084

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +3

Query: 264 KHLRWTMPGPDSSYSSFE-IHICWKVDREARMDP 362
           K++RW    PD + SSF+ + +   V+R+  +DP
Sbjct: 176 KYVRWPPLYPDWNQSSFDLVEVLSAVNRDLNIDP 209


>SB_41135| Best HMM Match : Ribonuc_red_lgN (HMM E-Value=0.78)
          Length = 230

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
 Frame = -3

Query: 412 KIKIIAPPERKYSVWIGGS-ILASLSTFQQMW--ISKEEYDESG 290
           K+K +  P ++Y + IGGS  + +     Q W  ++ EEY E+G
Sbjct: 163 KLKNVRSPGKRYRLAIGGSPFIQNERPKWQCWEAMTDEEYQEAG 206


>SB_27191| Best HMM Match : Lysis_S (HMM E-Value=5.6)
          Length = 181

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -3

Query: 406 KIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVH 275
           K++   + KY + I G+    L+ F    ISK EY    P I +
Sbjct: 50  KVVVIVDYKYELDIRGTKFGELTGFDPKVISKTEYGSKLPNITN 93


>SB_17734| Best HMM Match : zf-C2H2 (HMM E-Value=0.0003)
          Length = 369

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 428 RALDHQDQDHRSPREEVLRMDRWI 357
           + LDH+ + H   ++E+ R+ +WI
Sbjct: 62  KELDHKSELHSKQKKEIKRLKKWI 85


>SB_8349| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1104

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -3

Query: 250 PRDPGAVWCCARPSSERNRQYVVPSDT 170
           P DPG++W    PS E  ++Y  P DT
Sbjct: 262 PNDPGSLWNFVSPSME--KRYGNPRDT 286


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,513,498
Number of Sequences: 59808
Number of extensions: 222709
Number of successful extensions: 648
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 859323430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)