Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30084X
         (319 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    24   6.4  
SPAC824.08 |gda1|gdp1|guanosine-diphosphatase Gda1|Schizosacchar...    24   6.4  
SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces ...    24   6.4  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   6.4  
SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    23   8.5  

>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +3

Query: 123 WNY*QRQYCFHLFLFIRCKPNPKY 194
           W++ +R +   LF ++RC+P   Y
Sbjct: 102 WDHMERFWQQSLFKYLRCEPEDHY 125


>SPAC824.08 |gda1|gdp1|guanosine-diphosphatase
           Gda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 556

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 7/22 (31%), Positives = 14/22 (63%)
 Frame = +3

Query: 153 HLFLFIRCKPNPKYVCEIYRLL 218
           H++ F  C P+PK   E ++++
Sbjct: 148 HVYQFNNCNPSPKLEEEFFKMI 169


>SPBC577.06c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1877

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +3

Query: 165  FIRCKPNPKYVCEIYRLLLE 224
            F+ C+P   Y+C+   ++L+
Sbjct: 1798 FLACRPYAHYICQAVEVMLD 1817


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +3

Query: 222 ERNVLGDVGNST-SDLLRHWWGSGDSI 299
           + N+LG   N   +D  R+WW S D++
Sbjct: 89  DNNLLGSRTNFMYADPFRYWWQSSDTM 115


>SPCC306.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 283

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +1

Query: 37  YFIYTCFQITHYEYNGNLTFKT 102
           Y + TCF  T Y  N N   +T
Sbjct: 204 YLVNTCFNGTQYPVNCNSALRT 225


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,481
Number of Sequences: 5004
Number of extensions: 23259
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)