Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30084X
         (319 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)             29   0.82 
SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)                    29   1.1  
SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)             27   2.5  
SB_40597| Best HMM Match : Dynein_heavy (HMM E-Value=0.55)             27   3.3  
SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)                27   4.4  
SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   5.8  
SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)           26   5.8  
SB_38470| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_42284| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  
SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.6  

>SB_5478| Best HMM Match : NDT80_PhoG (HMM E-Value=3.6e-21)
          Length = 781

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = +2

Query: 38  TLFTLASKLHTTSITAI*RLKRIYITISMELLTAPVLFS 154
           TL+  ASK HT     + R  RI +  S+ +L+A V+F+
Sbjct: 734 TLYVFASKDHTEICLRLTRYSRIVVMYSLLVLSAYVMFT 772


>SB_5024| Best HMM Match : rve (HMM E-Value=6.3e-36)
          Length = 1677

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -2

Query: 282  PTSALADRLCCCLHRQEHSSQEVSDK 205
            P S L    CCC H +E  S   SDK
Sbjct: 1188 PLSLLFSCCCCCCHGREFPSARTSDK 1213


>SB_39435| Best HMM Match : 7tm_1 (HMM E-Value=4.60004e-41)
          Length = 352

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
 Frame = +1

Query: 55  FQITHYEYNGNLTFKTYLYNN*HGITDSASIVFIYSYSFGVNLIQNTSVRFIAY--FLRG 228
           F+ TH++ N N+     ++N+  G+   A+ + IY   F V++I  + +  I Y   L+G
Sbjct: 153 FEDTHFDVNANMCTSALVFNSGQGM---ATYLGIY---FSVSIIIPSIIITICYLSILKG 206

Query: 229 MFL 237
           +F+
Sbjct: 207 LFI 209


>SB_40597| Best HMM Match : Dynein_heavy (HMM E-Value=0.55)
          Length = 403

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +3

Query: 177 KPNPKYVCEIYRLLLERNVLGDVGNSTS 260
           K  P Y C +Y+    R  L   G+ST+
Sbjct: 347 KSKPNYPCPVYKTSARRGTLSTTGHSTN 374


>SB_22071| Best HMM Match : Keratin_B2 (HMM E-Value=3.3)
          Length = 260

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -1

Query: 319 TKTSPLVMLSPLPH-QCLSRSLVLLPT 242
           T T P   +SP+PH   +   LVL+PT
Sbjct: 136 TSTRPHASMSPVPHVNSIQHQLVLVPT 162


>SB_22293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1239

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
 Frame = +1

Query: 25  LLKLYFIYTCFQITHYEYNGNLTFKTYLYNN*HGIT--DSASIVFIYSYSFGVNLIQNTS 198
           +  L F Y  F     + NG+LTF    Y   H +T   S S+ F Y     V      S
Sbjct: 446 ICSLTFFYQVFHRVTCQSNGSLTF---FYQVFHRVTCQSSGSLTFFYQVFHRVTCQSYGS 502

Query: 199 VRFIAYFLR 225
           + F   F R
Sbjct: 503 LTFYQVFHR 511


>SB_5539| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.033)
          Length = 551

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 64  THYEYNGNLTFKTYLYNN*HGITDSASIVFIYSY 165
           TH  Y GN T K Y  N  H +    +   +Y+Y
Sbjct: 298 THQLYKGNTTHKLYKVNTTHQLYKRNATQQLYNY 331


>SB_38470| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 205

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 49  TCFQITHYEYNGNLTFKTYLYN 114
           T  Q+T ++YN ++   T+LYN
Sbjct: 131 TSMQLTTHQYNTSMQLTTHLYN 152


>SB_42284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 NVLGDVGNSTSDLLRHWWGSGDSITSG 308
           + LGD G++  DL   W+ +GD +  G
Sbjct: 69  SALGDHGDNGEDLTGGWYDAGDYVKFG 95


>SB_42282| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 572

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 NVLGDVGNSTSDLLRHWWGSGDSITSG 308
           + LGD G++  DL   W+ +GD +  G
Sbjct: 186 SALGDHGDNGEDLTGGWYDAGDYVKFG 212


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,235,773
Number of Sequences: 59808
Number of extensions: 166151
Number of successful extensions: 366
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)