Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30084X
(319 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07280.1 68415.m00835 hypothetical protein 27 2.1
At1g20410.1 68414.m02545 expressed protein 27 2.7
At5g22550.2 68418.m02633 expressed protein contains Pfam profile... 26 4.8
At5g22550.1 68418.m02632 expressed protein contains Pfam profile... 26 4.8
At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family... 26 6.3
At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR... 26 6.3
At3g25805.1 68416.m03212 expressed protein 26 6.3
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 26 6.3
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r... 26 6.3
At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase fa... 26 6.3
At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo sapi... 25 8.3
At3g42820.1 68416.m04484 hypothetical protein hypothetical prote... 25 8.3
At1g48400.1 68414.m05406 F-box family protein contains F-box dom... 25 8.3
At1g47915.1 68414.m05336 F-box family protein contains F-box dom... 25 8.3
>At2g07280.1 68415.m00835 hypothetical protein
Length = 401
Score = 27.5 bits (58), Expect = 2.1
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = +1
Query: 55 FQITHYEYNGNLTFKTYLYNN*HGITDSASIVFIYSYSFGV 177
+ ++ Y+ NG FKT ++N H + +F++ + +
Sbjct: 333 YHVSQYQPNGEQVFKTPIHNQVHHTIPNTYTLFLHCFCISI 373
>At1g20410.1 68414.m02545 expressed protein
Length = 504
Score = 27.1 bits (57), Expect = 2.7
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = +3
Query: 195 VCE--IYRLLLERNVLGDVGNSTSDLLRHWWGSGDSITS 305
VCE I+RL+ D+ + ++ LR W SGD TS
Sbjct: 50 VCERCIFRLVSVEAFDSDISSVSTSTLRSWLKSGDDETS 88
>At5g22550.2 68418.m02633 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 492
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 288 HFPTSALADRLCCCLHRQEHSSQEVSDKSH 199
H SA DR CC ++R H+ ++V+DK++
Sbjct: 34 HLKESA-GDRFCC-IYRIPHTLKQVNDKAY 61
>At5g22550.1 68418.m02632 expressed protein contains Pfam profile
PF03140: Plant protein of unknown function
Length = 443
Score = 26.2 bits (55), Expect = 4.8
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 288 HFPTSALADRLCCCLHRQEHSSQEVSDKSH 199
H SA DR CC ++R H+ ++V+DK++
Sbjct: 34 HLKESA-GDRFCC-IYRIPHTLKQVNDKAY 61
>At5g26070.1 68418.m03102 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; similar to root nodule extensin
[Pisum sativum] gi|15021750|gb|AAK77902; Common family
members: At5g19800, At5g57070, At1g72790 [Arabidopsis
thaliana]
Length = 102
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 310 SPLVMLSPLPHQCLSRSLVLLPTSP 236
SP+ + P PH SR + L PT P
Sbjct: 49 SPVTLPPPPPHPAYSRPVALPPTLP 73
>At4g14370.1 68417.m02214 disease resistance protein (TIR-NBS-LRR
class), putative similar to zinc finger protein
(GI:15811367) [Arabidopsis thaliana]; similar to
TIR-NBS-LRR (GI:27466164) [Arabidopsis thaliana]; similar
to disease resistance protein RPP1-WsB (GI:3860165)
[Arabidopsis thaliana]
Length = 1996
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/35 (31%), Positives = 15/35 (42%)
Frame = +3
Query: 189 KYVCEIYRLLLERNVLGDVGNSTSDLLRHWWGSGD 293
K C ++ + V+ G STS WG GD
Sbjct: 1365 KVACGVWHTVAIVEVMNQTGTSTSSRKLFTWGDGD 1399
>At3g25805.1 68416.m03212 expressed protein
Length = 335
Score = 25.8 bits (54), Expect = 6.3
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 258 LCCCLHRQEHSSQEVSDKSHRRIL 187
LCC + E ++ EV D S RRI+
Sbjct: 62 LCCARRKPETATVEVEDDSIRRIV 85
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 25.8 bits (54), Expect = 6.3
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 183 NPKYVCEIYRLLLERNVL 236
+P Y CE YR L++R++L
Sbjct: 1715 HPAYCCERYRELIQRHIL 1732
>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
factory-related similar to RNA helicase GB:AAF03534
Length = 1317
Score = 25.8 bits (54), Expect = 6.3
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 121 HGITDSASIVFIYSYSFGVNLIQNTSVRFIAYFLR 225
H I S+ IYSY+F +++Q IAY L+
Sbjct: 861 HVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLK 895
>At2g48080.1 68415.m06018 oxidoreductase, 2OG-Fe(II) oxygenase
family protein contains Pfam domain PF03171 2OG-Fe(II)
oxygenase superfamily
Length = 438
Score = 25.8 bits (54), Expect = 6.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 310 SPLVMLSPLPHQCLSRSLVLLPTSP 236
SPLVML+P P + + + V LP +P
Sbjct: 375 SPLVMLAPAPKRLDAGTGVFLPWTP 399
>At4g12100.1 68417.m01922 expressed protein cullin-4A - Homo
sapiens, PID:d1034112
Length = 434
Score = 25.4 bits (53), Expect = 8.3
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +3
Query: 141 QYCFHLFLFIRCKPNPKYVCEIYRLLLERNVLGDVGNSTSDLLRH 275
Q FH L + + + + I RL+ + LG N+TSDLL++
Sbjct: 196 QKLFHKQLSMAPQLQDQVITGILRLITDER-LGKAANNTSDLLKN 239
>At3g42820.1 68416.m04484 hypothetical protein hypothetical proteins
- Arabidopsis thaliana
Length = 906
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = -3
Query: 314 NQPTGNAIPTSP--PVP*QIACAV 249
+QPTG +P+SP Q+ACAV
Sbjct: 585 SQPTGGVVPSSPNDVEESQVACAV 608
>At1g48400.1 68414.m05406 F-box family protein contains F-box domain
Pfam:PF00646
Length = 513
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 316 KTSPLVMLSPLPHQCLSRSLVLLPT 242
+TSP +S LP + L + L LLPT
Sbjct: 5 RTSPRDSISNLPDEILGKILSLLPT 29
>At1g47915.1 68414.m05336 F-box family protein contains F-box domain
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 73
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -1
Query: 316 KTSPLVMLSPLPHQCLSRSLVLLPT 242
+TSP +S LP + L + L LLPT
Sbjct: 3 RTSPRDSISNLPDEILGKILSLLPT 27
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,444,612
Number of Sequences: 28952
Number of extensions: 115653
Number of successful extensions: 299
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 299
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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