Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30083
         (919 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    24   1.7  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   3.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   6.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   9.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   9.0  
AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alph...    22   9.0  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 484 LATVQLGASCRVHG 443
           L  V LG++CR+HG
Sbjct: 433 LEAVNLGSACRIHG 446


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 472 QLGASCRVHGESLVRVDGHTE 410
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 472 QLGASCRVHGESLVRVDGHTE 410
           + G SC +HG  L  +  HTE
Sbjct: 429 RFGGSCLIHGPPLPPLPLHTE 449


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = -2

Query: 672 WLGSFFWEAPTVAKYAITFFVFSVLPAPDSPV 577
           +L  F W+ P    Y  T    + LP P  P+
Sbjct: 281 YLEEFDWQKPFYPGYYPTMTYSNGLPFPQRPI 312


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 345 ASLRYVKLDISSHFSYLGGLTCAT*SFLKSLVS 247
           +SLR  K  ISSH    G + C +  F + L++
Sbjct: 46  SSLRNYKTLISSHDELPGHINCDSSKFEEDLMN 78


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 11/37 (29%), Positives = 15/37 (40%)
 Frame = -2

Query: 777  PKREELSLRTVLALPNASSTGLVCTT*SSREPFFSWL 667
            P  EE    T   +P        CTT +S+    SW+
Sbjct: 1067 PMSEERRQHTAEGVPEQPPHDTTCTTLTSQTIRISWM 1103


>AM420631-1|CAM06631.1|  153|Apis mellifera bursicon subunit alpha
           protein precursor protein.
          Length = 153

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = -2

Query: 237 RLTVTRSPLVALISPCT 187
           R  +T++PL  +  PCT
Sbjct: 103 RKVITKAPLECMCRPCT 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 255,989
Number of Sequences: 438
Number of extensions: 5798
Number of successful extensions: 14
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29871933
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)