Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30082X
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 194 1e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 1e-19
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 89 4e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 88 7e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 73 2e-14
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 57 2e-09
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 48 1e-06
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 44 1e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 44 2e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.1
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 3.4
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.9
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 7.8
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 194 bits (472), Expect = 1e-50
Identities = 88/100 (88%), Positives = 94/100 (94%)
Frame = -1
Query: 571 ETVYISIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPPER 392
E Y SIMKCDVDIRKDLY N VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPER
Sbjct: 276 EATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPER 335
Query: 391 KYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 272
KYSVWIGGSILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 91.1 bits (216), Expect = 1e-19
Identities = 41/98 (41%), Positives = 68/98 (69%)
Frame = -1
Query: 565 VYISIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPPERKY 386
++ SI+ D+D+R LY+N V+SGG+T+ G +R E+ A++ ++KI A PER +
Sbjct: 283 LFKSILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMH 342
Query: 385 SVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRKCF 272
+ W+GGSILASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 343 NAWLGGSILASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 89.0 bits (211), Expect = 4e-19
Identities = 43/93 (46%), Positives = 60/93 (64%), Gaps = 2/93 (2%)
Frame = -1
Query: 571 ETVYISIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAP-STIKIKIIAPPE 395
E VY SI+ CD ++R L N V++GGT++ PG+++R+Q E+ LA S I +
Sbjct: 326 ELVYQSILACDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETAS 385
Query: 394 R-KYSVWIGGSILASLSTFQQMWISKEEYDESG 299
+VW GGSILASL FQ +W+SK+EYDE G
Sbjct: 386 ATSNAVWFGGSILASLDNFQHLWVSKQEYDEVG 418
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 88.2 bits (209), Expect = 7e-19
Identities = 43/99 (43%), Positives = 65/99 (65%), Gaps = 6/99 (6%)
Frame = -1
Query: 553 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYS 383
I +CDVDIR L N ++ GGT++ G + R+Q E+ L P + ++KI A ER Y+
Sbjct: 335 ISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYA 393
Query: 382 VWIGGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 275
W+GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 394 SWLGGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 73.3 bits (172), Expect = 2e-14
Identities = 41/103 (39%), Positives = 64/103 (62%), Gaps = 12/103 (11%)
Frame = -1
Query: 571 ETVYISIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXAL--------APSTI-- 422
E ++ +I DVDIRK LY V+SGG++MY G+ R++KEI L P+ +
Sbjct: 276 EFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPN 335
Query: 421 -KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 299
K+KI P R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 336 FKVKIEDAPRRRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 56.8 bits (131), Expect = 2e-09
Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 14/105 (13%)
Frame = -1
Query: 553 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTI--------------KI 416
+ +D+RK LY N V+SGG+T++ +R+Q+++ + I +
Sbjct: 315 VQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDV 374
Query: 415 KIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 281
+I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 375 NVISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 48.0 bits (109), Expect = 1e-06
Identities = 29/98 (29%), Positives = 46/98 (46%)
Frame = -1
Query: 571 ETVYISIMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPPER 392
E V S+ +I+ L N V GG +PG R+ E+ +LAP+ ++K+ P +
Sbjct: 302 EAVMQSVTHFPENIQAMLLENVVTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDP 361
Query: 391 KYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHRK 278
W S + L + I++ EY E G I+ RK
Sbjct: 362 ICFPWKKASHM-PLEHWNANKITRSEYSEHGANIMTRK 398
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 44.4 bits (100), Expect = 1e-05
Identities = 20/86 (23%), Positives = 43/86 (50%)
Frame = -1
Query: 553 IMKCDVDIRKDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPPERKYSVWI 374
+ + ++ ++ L +N +++GG PG+ R+++E+ ++ P I + W
Sbjct: 623 LQRHSLEEQQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWK 682
Query: 373 GGSILASLSTFQQMWISKEEYDESGP 296
G S + F+ +++EEY E GP
Sbjct: 683 GASEWSVTEKFKAAKVTREEYLEKGP 708
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 43.6 bits (98), Expect = 2e-05
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = -1
Query: 526 KDLYANTVMSGGTTMYPGIADRMQKEIXALAPSTIKIKIIAPP---ERKYSVWIGGSILA 356
K+LY++ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 355 SLSTFQQMWISKEEYDESGPGIVHRK 278
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.1
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -1
Query: 379 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 278
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 26.2 bits (55), Expect = 3.4
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -1
Query: 454 KEIXALAPSTIKIKIIAPPERKYSVWIGGSILASLST 344
KEI + A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +3
Query: 216 ELGRAQHHTAPGSRGRAA*KHLRWT 290
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 428 DHQDQDHRSPREEVLRMDRWIHPG 357
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.8
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -2
Query: 225 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKFYINLISFLFLLYTRDRCGSQR 58
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,851,145
Number of Sequences: 5004
Number of extensions: 32101
Number of successful extensions: 85
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 80
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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