Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30080X
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 173 1e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 79 4e-16
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 78 7e-16
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 74 2e-14
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 64 2e-11
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 50 3e-07
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 42 4e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 42 6e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 42 8e-05
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.0
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 27 1.3
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 27 1.8
SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|... 25 5.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 25 7.1
SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces po... 25 7.1
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 25 7.1
SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase |Schizosaccharo... 25 9.4
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 173 bits (422), Expect = 1e-44
Identities = 79/91 (86%), Positives = 86/91 (94%)
Frame = -3
Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 352
C+V IRKDLY VMSGGTTMYPGIADRMQKEI ALAPS++K+KI+APPERKYSVWIGGS
Sbjct: 285 CDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPERKYSVWIGGS 344
Query: 351 ILASLSTFQQMWISKEEYDESGPGIVHRKCF 259
ILASLSTFQQMWISK+EYDESGPGIV+RKCF
Sbjct: 345 ILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 79.0 bits (186), Expect = 4e-16
Identities = 36/90 (40%), Positives = 61/90 (67%)
Frame = -3
Query: 528 NVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 349
++ +R LY+ V+SGG+T+ G +R E+ A++ ++KI A PER ++ W+GGSI
Sbjct: 291 DIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSI 350
Query: 348 LASLSTFQQMWISKEEYDESGPGIVHRKCF 259
LASLSTF+++ I+ EEY ++ ++ R+ F
Sbjct: 351 LASLSTFRRLLITSEEY-KNDQNVIFRRRF 379
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 78.2 bits (184), Expect = 7e-16
Identities = 39/96 (40%), Positives = 62/96 (64%), Gaps = 6/96 (6%)
Frame = -3
Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWI 361
C+V IR L ++ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+
Sbjct: 338 CDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWL 396
Query: 360 GGSILASLSTFQQMWISKEEYDESGP---GIVHRKC 262
GGSIL+SL TF Q+WIS++EY+E G ++ ++C
Sbjct: 397 GGSILSSLGTFHQLWISRQEYEEHGSDRLALIEKRC 432
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 73.7 bits (173), Expect = 2e-14
Identities = 36/84 (42%), Positives = 52/84 (61%), Gaps = 2/84 (2%)
Frame = -3
Query: 531 CNVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPER-KYSVWIG 358
C+ +R L V++GGT++ PG+++R+Q E+ LA S I + +VW G
Sbjct: 335 CDSELRSPLLNNIVVTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFG 394
Query: 357 GSILASLSTFQQMWISKEEYDESG 286
GSILASL FQ +W+SK+EYDE G
Sbjct: 395 GSILASLDNFQHLWVSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 63.7 bits (148), Expect = 2e-11
Identities = 37/93 (39%), Positives = 58/93 (62%), Gaps = 12/93 (12%)
Frame = -3
Query: 528 NVAIRKDLYAYSVMSGGTTMYPGIADRMQKEITAL--------APSTI---KIKIIAPPE 382
+V IRK LY V+SGG++MY G+ R++KEI L P+ + K+KI P
Sbjct: 286 DVDIRKYLYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPR 345
Query: 381 RKYSVWIGGSILAS-LSTFQQMWISKEEYDESG 286
R+++V+IGG++LA ++ MW+SK E++E G
Sbjct: 346 RRHAVFIGGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 49.6 bits (113), Expect = 3e-07
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 14/100 (14%)
Frame = -3
Query: 525 VAIRKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIK--------------IKIIAP 388
+ +RK LY V+SGG+T++ +R+Q+++ + I + +I+
Sbjct: 320 IDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISH 379
Query: 387 PERKYSVWIGGSILASLSTFQQMWISKEEYDESGPGIVHR 268
++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 380 KRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 42.3 bits (95), Expect = 4e-05
Identities = 20/78 (25%), Positives = 39/78 (50%)
Frame = -3
Query: 516 RKDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 337
++ L + +++GG PG+ R+++E+T++ P I + W G S +
Sbjct: 631 QQKLVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVT 690
Query: 336 STFQQMWISKEEYDESGP 283
F+ +++EEY E GP
Sbjct: 691 EKFKAAKVTREEYLEKGP 708
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 41.9 bits (94), Expect = 6e-05
Identities = 23/76 (30%), Positives = 37/76 (48%)
Frame = -3
Query: 492 VMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWI 313
V GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I
Sbjct: 324 VTIGGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKI 382
Query: 312 SKEEYDESGPGIVHRK 265
++ EY E G I+ RK
Sbjct: 383 TRSEYSEHGANIMTRK 398
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 41.5 bits (93), Expect = 8e-05
Identities = 20/86 (23%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Frame = -3
Query: 513 KDLYAYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILA 343
K+LY+ ++ GG +PG A +++ I + + I +I PP + ++ W G I
Sbjct: 527 KNLYSSILIVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYN 586
Query: 342 SLSTFQQMWISKEEYDESGPGIVHRK 265
+ ++WI ++ G ++ K
Sbjct: 587 RIRIVSELWIKNSDWKMLGSRVLQYK 612
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = -3
Query: 366 WIGGSILASLSTFQQM---WISKEEYDESGPGIVHRK 265
++GGSI+A S + + +++ EEY + GP +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 501 AYSVMSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 382
AYSV +GG+ +PGI + I+A+ P ++ + I P+
Sbjct: 410 AYSVAAGGSLCHPGIPAIL---ISAICPHSLSFRPIILPD 446
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 441 KEITALAPSTIKIKIIAPPERKYSVWIGGSILASLST 331
KEI++ A S I + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPBC2D10.03c |||DUF866 domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 157
Score = 25.4 bits (53), Expect = 5.4
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 203 ELGRAQHHTAPGSRGRAA*KHLRWT 277
E+ R++ H+ PGS+G A +L WT
Sbjct: 46 EISRSETHSIPGSKGEA---NLIWT 67
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.0 bits (52), Expect = 7.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 415 DHQDQDHRSPREEVLRMDRWIHPG 344
D D+ R+ E VLRM R++ PG
Sbjct: 499 DIDDKKDRALSEHVLRMHRYLPPG 522
>SPCC162.02c |||AMP-binding dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 981
Score = 25.0 bits (52), Expect = 7.1
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Frame = -1
Query: 212 VRVLNATVSTLYLVIP--EN*TSNLTPSILM*FIVKIYINLISFLFLLYTRDRCGSQR 45
VR +A S +L P N SN TP+ + I K N+ S + L D C R
Sbjct: 575 VRFFHAIQSHFHLEGPIRYNMNSNCTPNSIASIIQKKSYNVSSITYELLNEDACALSR 632
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Frame = -3
Query: 501 AYSVMSGGTTMYPGIADRMQKEITALA--------PSTIKIKIIAPPERKYSVWI 361
AYS+ +GG+ +P I+ + I A + P ++ + ++ P + + S WI
Sbjct: 289 AYSLAAGGSLCHPDISVMIVSPICAHSLSLRPIHVPDSMALHVVIPQDAQQSSWI 343
>SPBP4H10.11c |||long-chain-fatty-acid-CoA ligase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 374 YFLSGGAMILILMVEGARAVISFCILSAIPGY 469
Y +SGGA + +A +S CI +PGY
Sbjct: 412 YCISGGAAL----AASTQAFLSSCICPVLPGY 439
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,849,390
Number of Sequences: 5004
Number of extensions: 33205
Number of successful extensions: 90
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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