Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30078X
         (420 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    21   3.7  
AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2 prot...    21   4.9  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   4.9  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 3.7
 Identities = 7/28 (25%), Positives = 12/28 (42%)
 Frame = -3

Query: 226 SWLVSKLSHSTYRPHTYTNRTCTHTYAA 143
           SW   +    +++P       CTH + A
Sbjct: 32  SWAGYRNGEGSFKPQNINANLCTHVHYA 59


>AY873913-1|AAW67569.2|  377|Tribolium castaneum chitinase 2
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 7/24 (29%), Positives = 9/24 (37%)
 Frame = -3

Query: 226 SWLVSKLSHSTYRPHTYTNRTCTH 155
           SW + +     Y P       CTH
Sbjct: 32  SWAIYRPDKGEYHPKNIDPNICTH 55


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 4.9
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = -3

Query: 262 RAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYINYTTT 95
           + W +    PSP+  VS     + R   +T   C  ++       +KH+  N+  T
Sbjct: 107 KTWKVEEDSPSPTSSVSPEVKDSSRDRPFTCEVCNRSFG------YKHVLQNHERT 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,284
Number of Sequences: 336
Number of extensions: 1512
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  9279512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)