Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30078X
         (420 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p...    29   0.39 
SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch...    27   1.6  
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   2.7  
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa...    25   6.3  
SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyc...    25   6.3  
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar...    24   8.4  

>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1323

 Score = 28.7 bits (61), Expect = 0.39
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = -3

Query: 226 SWLVSKLSHSTYRPHTYTNRTCTHTYAAPLPHTHKHMYINYTTTRIHVY 80
           SW+  K S+ ++       RTCT +  AP+     + YI     R+HVY
Sbjct: 674 SWIGQKYSNVSFEKIDVAERTCTISLNAPILPDDGYAYI-----RLHVY 717


>SPBC32H8.13c |mok12||alpha-1,3-glucan synthase
            Mok12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2352

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +2

Query: 221  PTRRRWNPSHQPSSCIYPC 277
            P    WNPS  P  C  PC
Sbjct: 2308 PNLGAWNPSEGPGPCASPC 2326


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 13/51 (25%), Positives = 26/51 (50%)
 Frame = -3

Query: 289 RSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAPL 137
           R+ + +++ R    R++  S  +LVS   H     + Y++  CTH +  P+
Sbjct: 224 RARAGQLELRCKKCRFVLASSDYLVS---HEPKDENNYSHTRCTHYFLEPI 271


>SPBC31F10.04c |srb4|med17|mediator complex subunit
           Srb4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 183 CGLYVECESLLTSQLGEGGIHLISQALVSILVDADLVF 296
           C L ++  SLL S+  E  I  IS  L S +  + L F
Sbjct: 119 CSLALDMTSLLLSKFKENSIETISPFLKSTVPPSSLQF 156


>SPAC31G5.19 |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1190

 Score = 24.6 bits (51), Expect = 6.3
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
 Frame = -3

Query: 244 WIPPSPSWLVSKLSHSTYRPHTYTNRT-CTHTYAAPLPHTHKHMY 113
           W PP P WL S L+  +        R  CT      +  T+  +Y
Sbjct: 455 WDPPVPEWLCSMLAEKSKGYGGADLRALCTEAALNSIKRTYPQLY 499


>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 320 LQKEVDRLEDEIGINKDRYKSLADEMDS 237
           ++K++  L+DE+ + K  YK    E+ +
Sbjct: 92  MEKQIQELKDEVSVVKTLYKEKCIELQA 119


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,254,310
Number of Sequences: 5004
Number of extensions: 20358
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)