Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30078X
         (420 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0248 + 10942363-10942612,10942702-10943345,10944301-109448...    29   1.5  
05_03_0048 + 7796372-7796674,7796969-7797169                           29   2.0  
08_02_0899 + 22401302-22401694                                         27   8.1  
01_07_0359 - 43042675-43042758,43042956-43043024,43043099-430431...    27   8.1  

>05_03_0248 +
           10942363-10942612,10942702-10943345,10944301-10944816,
           10945085-10945237,10945545-10945637
          Length = 551

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
 Frame = -3

Query: 238 PPSPSWLVSKLSHSTYRPHTYTNRTCTH-TYAAPLPHTHKHMY 113
           P +PSW   +        HT+ N T  H T AA  P+   H+Y
Sbjct: 357 PETPSWCTRRRIEECPPWHTFRNGTRVHRTDAARFPYAAYHVY 399


>05_03_0048 + 7796372-7796674,7796969-7797169
          Length = 167

 Score = 28.7 bits (61), Expect = 2.0
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 342 IREGSQETAEGGRQARRRDRHQQG 271
           I E S  T EGG + RRRD+ ++G
Sbjct: 136 IAEASTSTNEGGHKVRRRDKGKKG 159


>08_02_0899 + 22401302-22401694
          Length = 130

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 8/17 (47%), Positives = 15/17 (88%)
 Frame = +1

Query: 145 LRMCVYMFCLCMCVVCM 195
           L++ VY+FCLC+ ++C+
Sbjct: 112 LQLWVYVFCLCLKMLCI 128


>01_07_0359 -
           43042675-43042758,43042956-43043024,43043099-43043159,
           43043260-43043768,43044545-43045153,43045697-43045972,
           43046581-43046769,43047006-43047116,43047621-43047908,
           43047990-43048041,43048648-43048824,43049249-43049314,
           43049675-43049929,43050071-43050577,43050807-43050886,
           43050974-43051207
          Length = 1188

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
 Frame = -3

Query: 238 PPSPSWLVSKLSHSTYR-PHTYTNRTCTHTYAAPLPHTHKH 119
           PP    L + +S S+ R P     R      + P PHTH H
Sbjct: 20  PPRSVSLAASISFSSARKPPEPLRRAVADCLSPPAPHTHTH 60


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,085,929
Number of Sequences: 37544
Number of extensions: 140797
Number of successful extensions: 423
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 766563072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)