Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= epV30078X
(420 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 54 3e-08
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 54 3e-08
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 50 7e-07
D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein. 46 1e-05
D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein. 46 1e-05
AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical ... 46 1e-05
U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction... 32 0.19
U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction... 32 0.19
U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction... 32 0.19
U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction... 32 0.19
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 32 0.19
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 32 0.19
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 32 0.19
AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical ... 32 0.19
AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical ... 32 0.19
AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin i... 32 0.19
Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical p... 27 7.2
AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical ... 27 7.2
U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astaci... 26 9.5
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 54.4 bits (125), Expect = 3e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ K+RYK++++E+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELD 275
Query: 239 STFAE 225
STF E
Sbjct: 276 STFQE 280
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 54.4 bits (125), Expect = 3e-08
Identities = 26/65 (40%), Positives = 41/65 (63%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ K+RYK++++E+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELD 275
Query: 239 STFAE 225
STF E
Sbjct: 276 STFQE 280
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 50.0 bits (114), Expect = 7e-07
Identities = 24/65 (36%), Positives = 39/65 (60%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ K+RYK++++E+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELVHEKERYKTISEELD 275
Query: 239 STFAE 225
S E
Sbjct: 276 SNLPE 280
>D38542-1|BAA07545.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ + K+R ++L +E++
Sbjct: 188 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIE 247
Query: 239 STFAE 225
T E
Sbjct: 248 QTVQE 252
>D38539-3|BAA07542.1| 256|Caenorhabditis elegans CeTMIII protein.
Length = 256
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ + K+R ++L +E++
Sbjct: 188 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIE 247
Query: 239 STFAE 225
T E
Sbjct: 248 QTVQE 252
>AL132877-5|CAD45604.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1e protein.
Length = 256
Score = 45.6 bits (103), Expect = 1e-05
Identities = 22/65 (33%), Positives = 38/65 (58%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLEDE+ + K+R ++L +E++
Sbjct: 188 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEDELLLEKERVRNLTEEIE 247
Query: 239 STFAE 225
T E
Sbjct: 248 QTVQE 252
>U39650-4|AAK39186.1| 944|Caenorhabditis elegans Apical junction
molecule protein1, isoform b protein.
Length = 944
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 301 GSKTRSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAP 140
G+ T + +T + W I +P VS LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-3|AAK39188.1| 1148|Caenorhabditis elegans Apical junction
molecule protein1, isoform c protein.
Length = 1148
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 301 GSKTRSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAP 140
G+ T + +T + W I +P VS LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-2|AAM51517.1| 1439|Caenorhabditis elegans Apical junction
molecule protein1, isoform d protein.
Length = 1439
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 301 GSKTRSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAP 140
G+ T + +T + W I +P VS LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>U39650-1|AAK39187.1| 1480|Caenorhabditis elegans Apical junction
molecule protein1, isoform a protein.
Length = 1480
Score = 31.9 bits (69), Expect = 0.19
Identities = 18/54 (33%), Positives = 26/54 (48%)
Frame = -3
Query: 301 GSKTRSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAP 140
G+ T + +T + W I +P VS LS + P T RT T +Y+AP
Sbjct: 42 GNTTTTTTTHYAPKTWNDPSITTAPKIPVSLLSGAQPLPSVLTQRTTTSSYSAP 95
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 275
Query: 239 STFAE 225
E
Sbjct: 276 HMVQE 280
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 275
Query: 239 STFAE 225
E
Sbjct: 276 HMVQE 280
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 216 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 275
Query: 239 STFAE 225
E
Sbjct: 276 HMVQE 280
>AL132877-3|CAC70115.1| 256|Caenorhabditis elegans Hypothetical
protein Y105E8B.1c protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 188 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 247
Query: 239 STFAE 225
E
Sbjct: 248 HMVQE 252
>AL132877-2|CAC70113.2| 193|Caenorhabditis elegans Hypothetical
protein Y105E8B.1b protein.
Length = 193
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 125 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 184
Query: 239 STFAE 225
E
Sbjct: 185 HMVQE 189
>AF298180-1|AAG10302.1| 256|Caenorhabditis elegans tropomyosin
isoform IV protein.
Length = 256
Score = 31.9 bits (69), Expect = 0.19
Identities = 19/65 (29%), Positives = 31/65 (47%)
Frame = -2
Query: 419 QRVXEFKDQLKTLTG*LXXXXXXXXXXXXXXXRLQKEVDRLEDEIGINKDRYKSLADEMD 240
QR +++Q++T++ L +LQKEVDRLE+ + + L DE+D
Sbjct: 188 QREDSYEEQIRTVSSRLKEAETRAEFAERSVQKLQKEVDRLEELRDAEVLKARQLQDELD 247
Query: 239 STFAE 225
E
Sbjct: 248 HMVQE 252
>Z74042-17|CAA98537.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -3
Query: 307 STGSKTRSASTRIDT---RAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAPL 137
+T +T SAST + T + IP + + S + +T P T R T TY
Sbjct: 115 TTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTT--TRIRTWTYTTRY 172
Query: 136 PHTHKHMYINYTTTRIH 86
P H Y RIH
Sbjct: 173 PSVHDPNRHRYGQDRIH 189
>AL031623-1|CAA20938.1| 688|Caenorhabditis elegans Hypothetical
protein T11F9.12 protein.
Length = 688
Score = 26.6 bits (56), Expect = 7.2
Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Frame = -3
Query: 307 STGSKTRSASTRIDT---RAWLMRWIPPSPSWLVSKLSHSTYRPHTYTNRTCTHTYAAPL 137
+T +T SAST + T + IP + + S + +T P T R T TY
Sbjct: 115 TTTLRTTSASTTLSTTQPQTTTTTTIPSTTTMTESSSTSTTASPTT--TRIRTWTYTTRY 172
Query: 136 PHTHKHMYINYTTTRIH 86
P H Y RIH
Sbjct: 173 PSVHDPNRHRYGQDRIH 189
>U41554-3|AAA83298.2| 745|Caenorhabditis elegans Nematode astacin
protease protein38 protein.
Length = 745
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/40 (27%), Positives = 18/40 (45%)
Frame = -3
Query: 304 TGSKTRSASTRIDTRAWLMRWIPPSPSWLVSKLSHSTYRP 185
T S T + ST + + W+P PS+ + +T P
Sbjct: 553 TSSSTTTESTTVSSTTQSTTWLPTEPSFATGETEITTASP 592
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,994,643
Number of Sequences: 27780
Number of extensions: 121328
Number of successful extensions: 402
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 682028672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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