Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= epV30078X
         (420 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   5.6  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   5.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   9.9  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
            ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 243  HLISQALVSILVDADLVFEP 302
            +L+S+  VS+ +D+DL  EP
Sbjct: 972  YLVSKDGVSLNLDSDLPVEP 991


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 271 IDTRAWLMRWIPPSPSWL 218
           ID R W  R+ P S  W+
Sbjct: 71  IDKRPWWERYQPISYKWI 88


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = -3

Query: 202  HSTYRPHTYTNRTCTHTYAAPLPHTHKHMYINYTTT 95
            +S Y  +T+ + T TH      P     + +  TTT
Sbjct: 1344 YSCYVENTFGHDTVTHQLIVHAPPHSPQITLTATTT 1379


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,781
Number of Sequences: 438
Number of extensions: 1502
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10750329
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)